View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_39 (Length: 293)
Name: NF11625_low_39
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 36263515 - 36263241
Alignment:
| Q |
17 |
agatacaaaggacactaccgccaccatcaacaccactgtcaaaacctcatgtggaaaatctagctaggaataaagattcaagctcttctaagaaatgggt |
116 |
Q |
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| T |
36263515 |
agatacaaaggacactaccgccaccatcaacaccactgtcaaaacctcatgtggaaaatctagctaggaataaagattcaagctcttctaagaaatgggt |
36263416 |
T |
|
| Q |
117 |
ggttgttggaattgctgttggagctgcattcctgcttcttatcttttttgtgttgttattctgcttttgtcaggagcataagaacnnnnnnnnnttgtct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
36263415 |
ggttgttggaattgctgttggagctgcattcctgcttcttatcttttttgtgttgttattctgcttttgtcagcagcataagaacaaaaaaaaattgtct |
36263316 |
T |
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| Q |
217 |
tctgcagctaccaaaaccaccactgaggaagtctcaaataccaacacaagt---accaacccctccttttctctg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36263315 |
tctgcagctaccaaaaccaccactgaggaagtctcaaataccaacacaagtataaccaacccctccttttctctg |
36263241 |
T |
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