View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_4 (Length: 706)

Name: NF11625_low_4
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_4
NF11625_low_4
[»] chr7 (5 HSPs)
chr7 (17-640)||(780433-781056)
chr7 (635-701)||(780343-780409)
chr7 (88-165)||(18309184-18309261)
chr7 (635-693)||(780261-780319)
chr7 (103-152)||(5329667-5329716)
[»] scaffold0010 (5 HSPs)
scaffold0010 (18-440)||(125190-125614)
scaffold0010 (635-690)||(125044-125099)
scaffold0010 (597-693)||(124980-125076)
scaffold0010 (544-640)||(125123-125220)
scaffold0010 (526-566)||(125161-125201)
[»] chr2 (6 HSPs)
chr2 (17-408)||(23999489-23999879)
chr2 (443-589)||(31512036-31512182)
chr2 (299-409)||(31512192-31512303)
chr2 (464-566)||(31511877-31511978)
chr2 (457-490)||(23999430-23999463)
chr2 (88-152)||(7312252-7312316)
[»] chr8 (11 HSPs)
chr8 (212-386)||(14652452-14652633)
chr8 (441-640)||(14652197-14652397)
chr8 (452-585)||(14652290-14652423)
chr8 (635-693)||(14652115-14652173)
chr8 (103-152)||(18976158-18976207)
chr8 (88-152)||(14675110-14675174)
chr8 (88-143)||(9907971-9908026)
chr8 (17-152)||(16079138-16079278)
chr8 (103-152)||(3302077-3302126)
chr8 (88-152)||(14368698-14368762)
chr8 (89-145)||(21937168-21937224)
[»] chr5 (8 HSPs)
chr5 (457-566)||(26068424-26068533)
chr5 (496-573)||(26068454-26068531)
chr5 (207-312)||(26068644-26068748)
chr5 (443-493)||(26068423-26068473)
chr5 (103-199)||(15213915-15214011)
chr5 (103-152)||(26858495-26858544)
chr5 (103-152)||(38839075-38839124)
chr5 (103-195)||(40570751-40570843)
[»] chr6 (3 HSPs)
chr6 (17-171)||(24068761-24068917)
chr6 (103-152)||(8671782-8671831)
chr6 (88-152)||(19574770-19574834)
[»] chr4 (1 HSPs)
chr4 (88-198)||(31815637-31815747)
[»] chr1 (4 HSPs)
chr1 (97-206)||(47832916-47833024)
chr1 (97-311)||(23351950-23352163)
chr1 (36-199)||(24278071-24278239)
chr1 (103-152)||(15155452-15155501)
[»] chr3 (12 HSPs)
chr3 (454-510)||(11512555-11512611)
chr3 (452-575)||(11512227-11512350)
chr3 (468-602)||(11512206-11512341)
chr3 (88-199)||(18559184-18559295)
chr3 (97-194)||(807503-807600)
chr3 (103-152)||(19805478-19805527)
chr3 (441-573)||(11512105-11512237)
chr3 (459-535)||(11512308-11512384)
chr3 (103-199)||(12207874-12207970)
chr3 (36-152)||(17595683-17595804)
chr3 (103-152)||(2691228-2691277)
chr3 (103-152)||(11134795-11134844)
[»] scaffold1956 (1 HSPs)
scaffold1956 (17-123)||(241-347)
[»] scaffold2108 (1 HSPs)
scaffold2108 (88-194)||(574-680)
[»] scaffold0044 (1 HSPs)
scaffold0044 (88-152)||(82174-82238)
[»] scaffold0208 (1 HSPs)
scaffold0208 (103-152)||(87-136)


Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 640
Target Start/End: Complemental strand, 781056 - 780433
Alignment:
Q  17 caaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttatttaactaattacttcgaagttcgaaagtaatgttatatttaaga 116  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | |    
T  781056 caaagagtacatagttcatattaaatatgattgcttacgttttaagactcatttatttaactaattacttcgaagttcggaagtaatgttatatttcaaa 780957  T
Q  117 taaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatttaaatgttgaaaaaaga 216  Q
    |||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  780956 taaatcaagtttgggatgcaaataagcccgccaagggcgagattaaacaaagaagagaaaccatcaaacaacacgccataatttaaatgttgaaaaaaga 780857  T
Q  217 atgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactctgaaatttgttttgcaggggtt 316  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  780856 atgcatatggaaggaatagtcccttctttaaagagcataaaggtgaaacgcggaattatactaagctttcttgaactttgaaatttgttttgcaggggtt 780757  T
Q  317 ttaacgaggcaccttgccttctgaaaagtgatgttgttttctttacttgatgccagccaaaatgaggaaacgacaaatgccaaaaatacttgttgaacat 416  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |    
T  780756 ttaacgaggcaccttgccttctgaaaagtgatgttgttttctctacttgatcccatccaaaatgaggaaacgacaaatgccaaaaatacttgttgaacgt 780657  T
Q  417 cgtcgttctgtcaaccctgaaagagacattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgt 516  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  780656 cgccgttccgtcaaccctgaaagagacattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaacctcgt 780557  T
Q  517 catttcgttaaccctgaaaaaaggctctgaacgtcgccatttcgtcaaccttgaaagagtgatctgaacatcgccttacgtcaaccacacaaggctctga 616  Q
    ||||  ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||| ||| ||||||| |    
T  780556 cattctgttaaccctgaaaaagggctttgaacgttgccatttcgtcaaccttgaaagagttctctgaacgtcgccttacgtcaaccccacgaggctctaa 780457  T
Q  617 aagtggggtcaaccctctgaggct 640  Q
    ||||||||||||||||||||||||    
T  780456 aagtggggtcaaccctctgaggct 780433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 635 - 701
Target Start/End: Complemental strand, 780409 - 780343
Alignment:
Q  635 gaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaaccctttgcttct 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  780409 gaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaaccctttgattct 780343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 18309184 - 18309261
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaaca 165  Q
    |||||||  ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||| ||| ||||    
T  18309184 gaagttcagaagtaatgttatatttaagataaataaagtttgggaggcaaacaagcccgccaagggcgagattgaaca 18309261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 693
Target Start/End: Complemental strand, 780319 - 780261
Alignment:
Q  635 gaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaaccct 693  Q
    |||||| || |||||||||||| |||||||||||||||| ||||| |||| ||||||||    
T  780319 gaggctatgaacaaatcttaacgtcaaccccacgaggctttgaacatggcatcaaccct 780261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 5329716 - 5329667
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||||||| ||| | ||||||||| ||||||    
T  5329716 tgttatatttcagataaatcaagtttgagatactaacaagcccgccaagg 5329667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 125614 - 125190
Alignment:
Q  18 aaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttatttaactaattacttcgaagttcgaaagtaatgttatatttaagat 117  Q
    |||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||    
T  125614 aaagagtacttaattcctattaaaaaggattgcttacgatttaagactcctttatttaactgattacttagaagttcggaagtaatgttatatttcagat 125515  T
Q  118 aaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatttaaatgttgaaaaaagaa 217  Q
    ||||||||||| |||||||||||| ||  |||||| ||| ||||||||||||||| || | ||||||||||| || | ||||||||||||||||||||||    
T  125514 aaatcaagtttcggatgcaaacaatccggccaagggcgagattaaacaaagaagataatctatcaaacaacatgctagaatttaaatgttgaaaaaagaa 125415  T
Q  218 tgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactctgaaatttgttttgcagg-ggtt 316  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||   ||    
T  125414 tgcatatggacggaatagtcccaccattaaagagcataaaggtgaaacgcgaaattatactaagctttatcgaactttgaagtttgttttgcaggttttt 125315  T
Q  317 ttaacgaggcaccttgccttctgaaaagtgatgttgttttctttacttgatgccagccaaaatgagg-aaacgacaaatgccaaaaatacttgttgaaca 415  Q
    ||||| |||||||||||||||||||||||| |||||| |||| || ||||| ||| || |||||||| ||| |||||| |||||||||||||| |||||     
T  125314 ttaacaaggcaccttgccttctgaaaagtgttgttgtcttctctatttgatcccaaccgaaatgaggaaaaagacaaaggccaaaaatacttgatgaacg 125215  T
Q  416 tcgtcgttctgtcaaccctgaaaga 440  Q
    ||| | || ||||||||||||||||    
T  125214 tcgccattgtgtcaaccctgaaaga 125190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 125099 - 125044
Alignment:
Q  635 gaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaac 690  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  125099 gaggctctgaacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaac 125044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 693
Target Start/End: Complemental strand, 125076 - 124980
Alignment:
Q  597 tcaaccacacaaggctctgaaagtggggtcaaccctctgaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaaccct 693  Q
    |||||| ||| |||||||||| |||| |||||| || ||||||| || |||||||||||  |||  ||||  |||||||||| ||||||||||||||    
T  125076 tcaaccccacgaggctctgaacgtggcgtcaacactatgaggctctgaacaaatcttaatgtcatacccagaaggctctgaatgtggcgtcaaccct 124980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 640
Target Start/End: Complemental strand, 125220 - 125123
Alignment:
Q  544 tgaacgtcgccatttcgtcaaccttgaaagagtgatctgaacatcgcc-ttacgtcaaccacacaaggctctgaaagtggggtcaaccctctgaggct 640  Q
    ||||||||||||||  ||||||| |||||||  | ||||||| ||||| ||||||||||| ||||||||||  || | || ||||||||| |||||||    
T  125220 tgaacgtcgccattgtgtcaaccctgaaagaaggctctgaacgtcgccattacgtcaaccccacaaggctcaaaatgcggcgtcaaccctatgaggct 125123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 566
Target Start/End: Complemental strand, 125201 - 125161
Alignment:
Q  526 aaccctgaaaaaaggctctgaacgtcgccatttcgtcaacc 566  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  125201 aaccctgaaagaaggctctgaacgtcgccattacgtcaacc 125161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 23999879 - 23999489
Alignment:
Q  17 caaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttattta-actaattacttcgaagttcgaaagtaatgttatatttaag 115  Q
    ||||||||| ||||||  |||||||||||||||  |||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||| || ||    
T  23999879 caaagagtatttagtttctattaaatatgattg--tacgatttaagactcctttatttatactgattactttgaagttcggaagtaatgttataattcag 23999782  T
Q  116 ataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatttaaatgttgaaaaaag 215  Q
    |||||||||| | ||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||| ||| |||||||||| | |||||     
T  23999781 ataaatcaaggt-gggatgcaaacaagcccgccaagggcgagattaaacaaagaagagaatccatcaaacaacacgacatgatttaaatgtaggaaaaaa 23999683  T
Q  216 aatgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactctgaaatttgttttgcaggggt 315  Q
    ||||||||||||||||||| | ||  || |||||||||||||| |||||| | ||||||| |||  |||||| ||||| ||| ||||||||||||||  |    
T  23999682 aatgcatatggaaggaataataccgccagtaaagagcataaagatgaaacacaaaattatcctatcctttctcgaactttgagatttgttttgcaggttt 23999583  T
Q  316 tttaacgaggcaccttgccttctgaaaagtgatgttgttttctttacttgatgccagccaaaatgagg-aaacgacaaatgccaaaaatacttg 408  Q
    |||||||||||||| ||| |||||||||||| ||| || |||| |||||||| |||| | |||| ||| ||| |||||| |||||| |||||||    
T  23999582 tttaacgaggcaccctgctttctgaaaagtgttgtggtcttctctacttgatcccagtcgaaataaggaaaaagacaaaggccaaatatacttg 23999489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 589
Target Start/End: Complemental strand, 31512182 - 31512036
Alignment:
Q  443 cattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggct 542  Q
    |||| ||| |||||| |||| ||||||||||| ||| | ||||||||||||| ||||  ||||||||| || | |||| ||| |||||| ||| | ||||    
T  31512182 cattccgtcaacctttaaagagggctctgaacatcgcctttacgtcaacccttaaagatggctctgaacgtcgacattccgtcaacccttaaagatggct 31512083  T
Q  543 ctgaacgtcgccatttcgtcaaccttgaaagagtgatctgaacatcg 589  Q
    |||||||||| |||| |||||| ||| | |||| |||||||| ||||    
T  31512082 ctgaacgtcgacattccgtcaaactttatagagagatctgaatatcg 31512036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 31512303 - 31512192
Alignment:
Q  299 atttgttttgcaggggttttaacgaggcaccttgccttctgaaaagtgatgttgttttctttacttgatgccagccaaaat-gaggaaacgacaaatgcc 397  Q
    |||| |||||||||  ||||||||||||||| | | |||||||||||||||| || |||  ||| |||| ||| | |||||  || ||| |||||| |||    
T  31512303 atttattttgcaggttttttaacgaggcaccctactttctgaaaagtgatgtcgtcttccctacctgattccaacaaaaataaagaaaaagacaaaggcc 31512204  T
Q  398 aaaaatacttgt 409  Q
    ||||||||||||    
T  31512203 aaaaatacttgt 31512192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 566
Target Start/End: Complemental strand, 31511978 - 31511877
Alignment:
Q  464 gggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtcgccatttcgtca 563  Q
    ||||||||||||||| |||||||||||||||  ||| ||||||||||||| |  |||| || ||||||  || | | |||||||| ||| |||| |||||    
T  31511978 gggctctgaacgtcgccattacgtcaaccct-caagtgggctctgaatgtcgctattttgtcaaccctttaagaggactctgaacatcgacattacgtca 31511880  T
Q  564 acc 566  Q
    |||    
T  31511879 acc 31511877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 490
Target Start/End: Complemental strand, 23999463 - 23999430
Alignment:
Q  457 tgaaagggggctctgaacgtcgacattacgtcaa 490  Q
    |||||| |||||||||||||||||||||||||||    
T  23999463 tgaaagagggctctgaacgtcgacattacgtcaa 23999430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 7312316 - 7312252
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||| | ||| |||||||||| |||||||||||| ||||||| | ||||| ||| ||||||    
T  7312316 gaagttcggaggtattgttatatttcagataaatcaaggttgggatactaacaaacccgccaagg 7312252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 212 - 386
Target Start/End: Complemental strand, 14652633 - 14652452
Alignment:
Q  212 aaagaatgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactctgaaatttgtttt---- 307  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||| ||||| |||||||||||||        
T  14652633 aaagaatgcatatggaaggaatagtccctccattaaagagcataaaggtgaaacgcggcattatacgaagctttctcgaactttgaaatttgttttattt 14652534  T
Q  308 -gcaggggttttaacgaggcaccttgccttctgaaaagtgatgttgttttctttacttg--atgccagccaaaatgaggaaa 386  Q
     |||||  ||||||||||||||| |||||||||||||||  ||| || || ||||||||  || |||||| |||||||||||    
T  14652533 tgcaggttttttaacgaggcaccctgccttctgaaaagttttgtcgtcttgtttacttgatatcccagccgaaatgaggaaa 14652452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 441 - 640
Target Start/End: Complemental strand, 14652397 - 14652197
Alignment:
Q  441 gacattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaagg 540  Q
    |||||||| | |||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||| | ||||  || |||||||||  | ||    
T  14652397 gacattacatcaaccctgaaagagggctctgaacatcgacattacgacaaccctgaaagggggctctgaatgtcgccattctgtcaaccctgaaggaggg 14652298  T
Q  541 ctctgaacgtcgccatttcgtcaaccttgaaagagtgatctgaacatcgcc-ttacgtcaaccacacaaggctctgaaagtggggtcaaccctctgaggc 639  Q
     ||||||||||| |||| ||||| || |||||||| ||||||||| || || ||||||||||| ||| | ||||| ||  ||  ||||||||| ||||||    
T  14652297 ttctgaacgtcgacattacgtcatccctgaaagagggatctgaacgtcaccattacgtcaaccccacgatgctctaaacatgacgtcaaccctatgaggc 14652198  T
Q  640 t 640  Q
    |    
T  14652197 t 14652197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 452 - 585
Target Start/End: Complemental strand, 14652423 - 14652290
Alignment:
Q  452 aaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtc 551  Q
    ||||||||| | |||||||||||||||||||||| |||||||| |||| ||||||||||  | | |||| ||  ||||||||||   ||||||||| |||    
T  14652423 aaccttgaaggagggctctgaacgtcgacattacatcaaccctgaaagagggctctgaacatcgacattacgacaaccctgaaagggggctctgaatgtc 14652324  T
Q  552 gccatttcgtcaaccttgaaagagtgatctgaac 585  Q
    ||||||  ||||||| |||| ||| | |||||||    
T  14652323 gccattctgtcaaccctgaaggagggttctgaac 14652290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 635 - 693
Target Start/End: Complemental strand, 14652173 - 14652115
Alignment:
Q  635 gaggctttggacaaatcttaacatcaaccccacgaggctctgaacgtggcgtcaaccct 693  Q
    |||||| || |||||||||||| | |||||||||||||||||||||||| |||||||||    
T  14652173 gaggctctgaacaaatcttaacgttaaccccacgaggctctgaacgtggtgtcaaccct 14652115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 18976158 - 18976207
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||||||||||| | ||||||||| ||||||    
T  18976158 tgttatatttcagataaatcaagtttgggatactaacaagcccgccaagg 18976207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 14675110 - 14675174
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||| ||||| | |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  14675110 gaagtttgaaagaattgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 14675174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 9907971 - 9908026
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagc 143  Q
    |||||||| ||||| |||||||||| |||| ||||| || ||||||||||||||||    
T  9907971 gaagttcgcaagtattgttatattttagattaatcatgtctgggatgcaaacaagc 9908026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 16079278 - 16079138
Alignment:
Q  17 caaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttattta----actaattacttcg-aagttcgaaagtaatgttatatt 111  Q
    |||||| || |||||||  ||| ||||||||||| || |||| || ||||  |||||||    ||||||||||| | ||||| | ||| | |||||||||    
T  16079278 caaagaatagttagttctcattgaatatgattgcatatgattaaacactcgattatttatgatactaattacttaggaagtttggaagaattgttatatt 16079179  T
Q  112 taagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    | |||||||||||| ||||||| | ||||||||| ||||||    
T  16079178 ttagataaatcaaggttgggatactaacaagcccgccaagg 16079138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 3302077 - 3302126
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  3302077 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 3302126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 14368698 - 14368762
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||| | ||| |||||||||| |||||||||||| ||||||| | ||||| ||| ||||||    
T  14368698 gaagttcggaggtattgttatatttcagataaatcaaggttgggatactaacaatcccgccaagg 14368762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 21937168 - 21937224
Alignment:
Q  89 aagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagccc 145  Q
    ||||||| | ||| |||||||||| |||||||||||| ||||||| | |||||||||    
T  21937168 aagttcggaggtattgttatatttcagataaatcaaggttgggatactaacaagccc 21937224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 566
Target Start/End: Complemental strand, 26068533 - 26068424
Alignment:
Q  457 tgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtcgccat 556  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||  |||||||| ||||||||||  ||||||||||||||| |||    
T  26068533 tgaaagggggctctgaacgttgacattacgtcaacccttaaagaaggctctgaacgttaccatttcgtcaaccctgaaaggaggctctgaacgtcgacat 26068434  T
Q  557 ttcgtcaacc 566  Q
    | ||||||||    
T  26068433 tacgtcaacc 26068424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 573
Target Start/End: Complemental strand, 26068531 - 26068454
Alignment:
Q  496 aaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtcgccatttcgtcaaccttgaaag 573  Q
    ||||||||||||||| |||| |||| ||| |||||| ||| ||||||||||||||  |||||||||||||| ||||||    
T  26068531 aaagggggctctgaacgttgacattacgtcaacccttaaagaaggctctgaacgttaccatttcgtcaaccctgaaag 26068454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 26068748 - 26068644
Alignment:
Q  207 tgaaaaaagaatgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactctgaaatttgttt 306  Q
    ||||||||||||||||||||||| ||| |||||  |||| |||||||  ||| |||||| | || |||| |||| ||||||||| || ||| ||||||||    
T  26068748 tgaaaaaagaatgcatatggaagcaattgtcccgccatt-aagagcaagaagatgaaactcaaagttatcctaacctttcttgacctttgatatttgttt 26068650  T
Q  307 tgcagg 312  Q
    ||||||    
T  26068649 tgcagg 26068644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 26068473 - 26068423
Alignment:
Q  443 cattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccc 493  Q
    |||| ||| |||| ||||||| |||||||||||||||||||||||||||||    
T  26068473 catttcgtcaaccctgaaaggaggctctgaacgtcgacattacgtcaaccc 26068423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 15214011 - 15213915
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatt 199  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| |||||| | | ||| |  |||| ||||||  || ||| |||||||||||||||    
T  15214011 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagggctagatttatgaaaggagagaattcaccaatcaacacgccataatt 15213915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 26858544 - 26858495
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  26858544 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 26858495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 38839075 - 38839124
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  38839075 tgttatatttcagataaatcaaggttgggataccaacaagcccgccaagg 38839124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 40570843 - 40570751
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccat 195  Q
    |||||||||| |||||||||||| ||||||| | ||||||| | |||||| | | || ||  |||||||||||  | |||| |||||||||||    
T  40570843 tgttatatttcagataaatcaaggttgggatactaacaagctcgccaagggctagatgaataaaagaagagaactcgtcaatcaacacgccat 40570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 24068761 - 24068917
Alignment:
Q  17 caaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttattta-acta-attacttcgaagttcgaaagtaatgttatatttaa 114  Q
    ||||||||| ||||||| |||| ||||||||||| ||  ||||||||||||||||| || |||  ||||| || ||||||| ||||||| |||||||| |    
T  24068761 caaagagtatttagttcctattgaatatgattgcataatatttaagactcctttatctatacttgattacgtcaaagttcggaagtaatattatatttta 24068860  T
Q  115 gataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaag 171  Q
    |||||||||||||| | |||||||||||||| |||| |  || ||||| ||||||||    
T  24068861 gataaatcaagtttcgaatgcaaacaagcccgccaaaggtgagattaagcaaagaag 24068917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 8671782 - 8671831
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  8671782 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 8671831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 19574834 - 19574770
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||| | ||| |||||||||| |||||||||||| ||||||| | ||||| ||| ||||||    
T  19574834 gaagttcggaggtattgttatatttcagataaatcaaggttgggatactaacaatcccgccaagg 19574770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 31815637 - 31815747
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaa 187  Q
    |||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||| ||| || ||| ||||||||||    ||||  || |||||||    
T  31815637 gaagttcggaagtaacgttatatttcagataaataaagtttgggaggcaaacaagcccgccacgggcgagattaaacaaaaggaagaactcaccaaacaa 31815736  T
Q  188 cacgccataat 198  Q
    |||||||||||    
T  31815737 cacgccataat 31815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 47832916 - 47833024
Alignment:
Q  97 aagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccata 196  Q
    ||||| |||||||||| |||||| | |||||||||||||||||||||||||||||| ||| |||||  |||| ||| ||  ||||||| | ||||||| |    
T  47832916 aagtattgttatatttcagataatt-aagtttgggatgcaaacaagcccaccaagggcgagattaacaaaaggagataactcatcaaatagcacgccaga 47833014  T
Q  197 atttaaatgt 206  Q
    ||||||||||    
T  47833015 atttaaatgt 47833024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 311
Target Start/End: Original strand, 23351950 - 23352163
Alignment:
Q  97 aagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccata 196  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||| |   |||||  || ||| |  |||| ||||||  ||  |||||| ||||||||    
T  23351950 aagtattgttatatttcagataaatcaagtttgggatggaaacaagtcagtcaagggtgaaattgacaaaaggagagaactcactaaacaatacgccata 23352049  T
Q  197 atttaaatgttgaaaaaag-aatgcatatggaaggaatagtcccttcattaaagagcataaaggtgaaacgcgaaattatactaagctttcttgaactct 295  Q
    ||||| | | ||||||| | |||||||||||||  ||| |||||  |||| |||| ||| ||| ||||||| | |||||| |||| |||| | ||||  |    
T  23352050 atttaga-ggtgaaaaacgaaatgcatatggaatcaattgtcccgccatt-aagaacatgaagatgaaacggggaattatcctaacctttttcgaacatt 23352147  T
Q  296 gaaatttgttttgcag 311  Q
    ||||||||||||||||    
T  23352148 gaaatttgttttgcag 23352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 24278239 - 24278071
Alignment:
Q  36 attaaatatgattgcttacgatttaagactcctttattta----actaattacttcg-aagttcgaaagtaatgttatatttaagataaatcaagtttgg 130  Q
    ||||||||||||||| || |||| | ||||| ||||||||    ||| ||||||| | ||||| | ||| | |||||||||| |||||||||||| ||||    
T  24278239 attaaatatgattgcatatgattaaggactcgtttatttatgatactgattactttggaagtttggaagaattgttatatttcagataaatcaaggttgg 24278140  T
Q  131 gatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatt 199  Q
    ||| | ||||||||| |||||| | | || ||  |||| ||||||| |  ||| |||||||||||||||    
T  24278139 gatactaacaagcccgccaagggctagatgaatgaaaggagagaaatcgccaatcaacacgccataatt 24278071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 15155501 - 15155452
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  15155501 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 15155452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 454 - 510
Target Start/End: Original strand, 11512555 - 11512611
Alignment:
Q  454 ccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaa 510  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  11512555 ccttgaaagggggatctgaacgtcgacattatgtcaacccttaaagagggctctgaa 11512611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 452 - 575
Target Start/End: Original strand, 11512227 - 11512350
Alignment:
Q  452 aaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtc 551  Q
    |||| ||||||||||||||||||||||||  |||| ||||||| |||| || |||| || || | |||||||| |||||| ||| | |||||||||| ||    
T  11512227 aaccctgaaagggggctctgaacgtcgacgctacgccaacccttaaagaggactctaaacgtcgccatttcgtcaacccttaaagagggctctgaacatc 11512326  T
Q  552 gccatttcgtcaaccttgaaagag 575  Q
    | | || |||||||| | ||||||    
T  11512327 gacgttacgtcaacccttaaagag 11512350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 602
Target Start/End: Original strand, 11512206 - 11512341
Alignment:
Q  468 tctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaaggctctgaacgtcgccatttcgtcaacct 567  Q
    ||||||||||| | || | |||||||| ||||||||||||||| || | |  | ||  |||||| ||| | | |||| |||||||||||||||||||||     
T  11512206 tctgaacgtcgtcgttccatcaaccctgaaagggggctctgaacgtcgacgctacgccaacccttaaagaggactctaaacgtcgccatttcgtcaaccc 11512305  T
Q  568 tgaaagagtgatctgaacatcg-ccttacgtcaacc 602  Q
    | |||||| | ||||||||||| | |||||||||||    
T  11512306 ttaaagagggctctgaacatcgacgttacgtcaacc 11512341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 18559184 - 18559295
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaa 187  Q
    |||||||| ||| | |||||||||| |||||||||||| ||||||| | ||||||||| |||||| | | || ||  |||| ||||||  | |||| |||    
T  18559184 gaagttcggaagaattgttatatttcagataaatcaaggttgggatactaacaagcccgccaagggctagatgaatgaaaggagagaactcgtcaatcaa 18559283  T
Q  188 cacgccataatt 199  Q
    ||||||||||||    
T  18559284 cacgccataatt 18559295  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 807503 - 807600
Alignment:
Q  97 aagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgcca 194  Q
    |||||| ||||||||| |||||||| ||||||||||  ||||||||||| ||||||  ||  |||||||||    ||||  |||||||||||||||||    
T  807503 aagtaacgttatatttcagataaataaagtttgggagacaaacaagccctccaagggtgaggttaaacaaaaggaagaactcatcaaacaacacgcca 807600  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 19805527 - 19805478
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||||||||||| | ||||||||| ||||||    
T  19805527 tgttatatttcagataaatcaagtttgggatactaacaagcccgccaagg 19805478  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 573
Target Start/End: Original strand, 11512105 - 11512237
Alignment:
Q  441 gacattacgtaaaccttgaaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaaaaagg 540  Q
    ||||||| || ||| || |||| ||| ||||||||||| |||| |||||| ||| ||| |||||| |||| |||| |||| ||| ||||||  |||| ||    
T  11512105 gacattatgtcaacttttaaagagggttctgaacgtcgccattccgtcaatcctgaaaaggggctttgaacgttgacattacgtcaaccctttaaaaggg 11512204  T
Q  541 ctctgaacgtcgccatttcgtcaaccttgaaag 573  Q
     ||||||||||| | || | |||||| ||||||    
T  11512205 ttctgaacgtcgtcgttccatcaaccctgaaag 11512237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 11512308 - 11512384
Alignment:
Q  459 aaagggggctctgaacgtcgacattacgtcaaccctaaaagggggctctgaatgttgtcatttcgttaaccctgaaa 535  Q
    |||| ||||||||||| ||||| ||||||||||||| |||| ||||| ||||||  | |||| |||||||| |||||    
T  11512308 aaagagggctctgaacatcgacgttacgtcaacccttaaagagggctatgaatgccgccattccgttaaccttgaaa 11512384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 12207970 - 12207874
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaacacgccataatt 199  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| |||||| | | || ||  |||| ||||||  || ||| |||||||||||||||    
T  12207970 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagggctagatgaatgaaaggagagaattcaccaatcaacacgccataatt 12207874  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 17595683 - 17595804
Alignment:
Q  36 attaaatatgattgcttacgatttaagactcctttattta----actaattacttcg-aagttcgaaagtaatgttatatttaagataaatcaagtttgg 130  Q
    ||||||||||||||| || |||| | ||||| ||||||||    ||| ||||||| | ||||| | ||| | |||||||||| |||||||||||| ||||    
T  17595683 attaaatatgattgcatatgattaaggactcgtttatttatgatactgattactttggaagtttggaagaattgttatatttcagataaatcaaggttgg 17595782  T
Q  131 gatgcaaacaagcccaccaagg 152  Q
    ||| | ||||||||| ||||||    
T  17595783 gatactaacaagcccgccaagg 17595804  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 2691228 - 2691277
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  2691228 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 2691277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 11134844 - 11134795
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  11134844 tgttatatttcagataaatcaaggttgggatactaacaagcccgccaagg 11134795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 347 - 241
Alignment:
Q  17 caaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttattta-actaattacttcgaagttcgaaagtaatgttatatttaag 115  Q
    ||||||||| |||||||| ||| ||||||||||| ||| ||| |||||||||||||||| | |  |||||| |||||||  |||||||||||| ||| ||    
T  347 caaagagtagttagttcacattgaatatgattgcatacaatt-aagactcctttatttatattggttactttgaagttcagaagtaatgttatgtttcag 249  T
Q  116 ataaatca 123  Q
    ||||||||    
T  248 ataaatca 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2108 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold2108
Description:

Target: scaffold2108; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 574 - 680
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaaggacgatattaaacaaagaagagaaaccatcaaacaa 187  Q
    |||||||  ||||||  |||||||| |||||||| |||||||||| ||||||||| || |||| | ||| ||||||||||    ||||  ||||||||||    
T  574 gaagttcagaagtaacattatatttcagataaataaagtttgggaggcaaacaagtccgccaaaggcgagattaaacaaaaggaagaactcatcaaacaa 673  T
Q  188 cacgcca 194  Q
    |||||||    
T  674 cacgcca 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 82174 - 82238
Alignment:
Q  88 gaagttcgaaagtaatgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||  |||||||||||||||| |||||||| ||  |||||| |||||||||||| ||||||    
T  82174 gaagttcagaagtaatgttatatttcagataaataaatcttgggaggcaaacaagcccgccaagg 82238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 136 - 87
Alignment:
Q  103 tgttatatttaagataaatcaagtttgggatgcaaacaagcccaccaagg 152  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| ||||||    
T  136 tgttatatttcagataaatcaagattgggatactaacaagcccgccaagg 87  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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