View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_48 (Length: 262)

Name: NF11625_low_48
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_48
NF11625_low_48
[»] chr5 (10 HSPs)
chr5 (1-105)||(2785166-2785270)
chr5 (1-104)||(33791108-33791211)
chr5 (1-104)||(31397183-31397286)
chr5 (1-104)||(31402040-31402143)
chr5 (1-104)||(33767971-33768074)
chr5 (1-104)||(37561636-37561740)
chr5 (1-104)||(37556814-37556918)
chr5 (1-104)||(28807765-28807868)
chr5 (1-74)||(27444793-27444864)
chr5 (1-79)||(15044507-15044581)
[»] chr8 (4 HSPs)
chr8 (1-104)||(35745183-35745286)
chr8 (1-104)||(10684455-10684558)
chr8 (1-79)||(39785014-39785091)
chr8 (1-79)||(25328468-25328545)
[»] chr6 (12 HSPs)
chr6 (1-104)||(33336134-33336237)
chr6 (1-104)||(6005209-6005312)
chr6 (1-104)||(33330637-33330740)
chr6 (4-105)||(16838535-16838636)
chr6 (1-104)||(5343272-5343375)
chr6 (16-79)||(28184320-28184382)
chr6 (1-79)||(14737767-14737843)
chr6 (1-79)||(14742626-14742702)
chr6 (16-104)||(6438294-6438380)
chr6 (7-79)||(28155767-28155837)
chr6 (1-104)||(11856765-11856866)
chr6 (1-76)||(22010887-22010960)
[»] chr3 (9 HSPs)
chr3 (1-104)||(10207725-10207828)
chr3 (1-104)||(2677278-2677382)
chr3 (1-104)||(8512007-8512110)
chr3 (1-104)||(8516887-8516990)
chr3 (1-106)||(32475274-32475379)
chr3 (1-104)||(2673122-2673226)
chr3 (1-104)||(32480133-32480237)
chr3 (1-42)||(24967961-24968002)
chr3 (1-79)||(18656251-18656326)
[»] scaffold0197 (2 HSPs)
scaffold0197 (1-104)||(19355-19458)
scaffold0197 (1-104)||(14500-14603)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-104)||(149146-149249)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-105)||(2441-2545)
[»] chr7 (12 HSPs)
chr7 (1-105)||(24266393-24266497)
chr7 (1-104)||(16879864-16879967)
chr7 (1-104)||(16884720-16884823)
chr7 (121-205)||(23152358-23152442)
chr7 (1-104)||(24261514-24261617)
chr7 (1-104)||(19992104-19992207)
chr7 (1-104)||(21812429-21812532)
chr7 (1-79)||(24024518-24024594)
chr7 (1-79)||(31109773-31109849)
chr7 (1-79)||(4866548-4866624)
chr7 (1-79)||(12396730-12396806)
chr7 (1-79)||(12406150-12406226)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-104)||(182155-182258)
[»] chr1 (7 HSPs)
chr1 (1-104)||(43988656-43988759)
chr1 (1-104)||(25445280-25445382)
chr1 (1-104)||(39445292-39445394)
chr1 (22-104)||(1055223-1055304)
chr1 (1-79)||(41386566-41386643)
chr1 (1-79)||(44024063-44024140)
chr1 (16-79)||(41398055-41398117)
[»] chr2 (5 HSPs)
chr2 (1-105)||(19344211-19344315)
chr2 (1-104)||(19349070-19349173)
chr2 (1-104)||(32246577-32246679)
chr2 (1-79)||(39812178-39812255)
chr2 (1-76)||(44312814-44312887)
[»] chr4 (7 HSPs)
chr4 (1-105)||(18855518-18855621)
chr4 (1-104)||(3813816-3813918)
chr4 (7-104)||(45348014-45348109)
chr4 (7-104)||(45357493-45357588)
chr4 (1-104)||(9224597-9224698)
chr4 (1-79)||(9229384-9229460)
chr4 (1-79)||(5732481-5732556)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-79)||(9830-9907)
scaffold0355 (31-79)||(101-148)
[»] scaffold0777 (1 HSPs)
scaffold0777 (56-104)||(6293-6341)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-104)||(155-257)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-79)||(34139-34216)
[»] scaffold0479 (1 HSPs)
scaffold0479 (16-104)||(13141-13228)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-79)||(35252-35328)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 2785270 - 2785166
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785270 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 2785171  T
Q  101 aacat 105  Q
    |||||    
T  2785170 aacat 2785166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33791211 - 33791108
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33791211 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattcac 33791112  T
Q  101 aaca 104  Q
    ||||    
T  33791111 aaca 33791108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31397183 - 31397286
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  31397183 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcac 31397282  T
Q  101 aaca 104  Q
    ||||    
T  31397283 aaca 31397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31402040 - 31402143
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  31402040 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattcac 31402139  T
Q  101 aaca 104  Q
    ||||    
T  31402140 aaca 31402143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33768074 - 33767971
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33768074 tggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattcac 33767975  T
Q  101 aaca 104  Q
    ||||    
T  33767974 aaca 33767971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37561636 - 37561740
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||| || ||||||||| |||||||||    
T  37561636 tggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattca 37561735  T
Q  100 caaca 104  Q
    |||||    
T  37561736 caaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37556814 - 37556918
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaag-gttcattagttgagccggattca 99  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||  || ||||||||| |||||||||    
T  37556814 tggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattca 37556913  T
Q  100 caaca 104  Q
    |||||    
T  37556914 caaca 37556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 28807765 - 28807868
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||| ||||||||  ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  28807765 tggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattca 28807863  T
Q  100 caaca 104  Q
    |||||    
T  28807864 caaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27444864 - 27444793
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtga 74  Q
    ||||| ||||||| |||||| ||||| | ||||| ||||||| |||||||||| ||||||| ||||||||||||    
T  27444864 tggagaccatttgtactcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 15044581 - 15044507
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | |||||||||||||||||| ||||||   |||| |||||||||||||||||    
T  15044581 tggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg---tatt-tcattggtgtgaaggtt 15044507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35745286 - 35745183
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745286 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 35745187  T
Q  101 aaca 104  Q
    ||||    
T  35745186 aaca 35745183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10684455 - 10684558
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10684455 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 10684554  T
Q  101 aaca 104  Q
    ||||    
T  10684555 aaca 10684558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39785014 - 39785091
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  39785014 tggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25328468 - 25328545
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| |||||||||||||  |||||||||| |||||| |||||| ||||||||||    
T  25328468 tggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33336134 - 33336237
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336134 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 33336233  T
Q  101 aaca 104  Q
    ||||    
T  33336234 aaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6005312 - 6005209
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6005312 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatttac 6005213  T
Q  101 aaca 104  Q
    ||||    
T  6005212 aaca 6005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33330637 - 33330740
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33330637 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccggattcac 33330736  T
Q  101 aaca 104  Q
    ||||    
T  33330737 aaca 33330740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 16838636 - 16838535
Alignment:
Q  4 aggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaac 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838636 aggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaac 16838537  T
Q  104 at 105  Q
    ||    
T  16838536 at 16838535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5343375 - 5343272
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5343375 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattcac 5343276  T
Q  101 aaca 104  Q
    ||||    
T  5343275 aaca 5343272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 28184382 - 28184320
Alignment:
Q  16 ctcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28184382 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14737767 - 14737843
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  14737767 tggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 14742626 - 14742702
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  14742626 tggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6438380 - 6438294
Alignment:
Q  16 ctcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    ||||| ||||| | ||||||||||||| |||||||||| ||||||| |||||||||||||||||| || || || ||||| ||||||||    
T  6438380 ctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaaca 6438294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 28155767 - 28155837
Alignment:
Q  7 ccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    |||||||| ||||| ||||||| ||||||||||||| |||||||||| |||||||  ||||||||||||||||    
T  28155767 ccatttgctctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11856866 - 11856765
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| ||||||||||| |||||| |||||||||||||||||  ||  |||| ||||||||||    
T  11856866 tggagaccatttgttctcattgattaccactatctcttgctccacacatcattg-tttatt-tcattggtgtgaaggttttttttttgaaccggattcac 11856769  T
Q  101 aaca 104  Q
    ||||    
T  11856768 aaca 11856765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22010887 - 22010960
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaag 76  Q
    ||||| |||||||  ||||| ||||| | ||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  22010887 tggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10207828 - 10207725
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10207828 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 10207729  T
Q  101 aaca 104  Q
    ||||    
T  10207728 aaca 10207725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2677278 - 2677382
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2677278 tggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggattca 2677377  T
Q  100 caaca 104  Q
    |||||    
T  2677378 caaca 2677382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8512110 - 8512007
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8512110 tggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcac 8512011  T
Q  101 aaca 104  Q
    ||||    
T  8512010 aaca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 8516990 - 8516887
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8516990 tggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcac 8516891  T
Q  101 aaca 104  Q
    ||||    
T  8516890 aaca 8516887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32475379 - 32475274
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32475379 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 32475280  T
Q  101 aacatg 106  Q
    ||||||    
T  32475279 aacatg 32475274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 2673122 - 2673226
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2673122 tggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggattca 2673221  T
Q  100 caaca 104  Q
    |||||    
T  2673222 caaca 2673226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32480237 - 32480133
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattgg-tttattctcattggtgtgaaggttcattagttgagccggattca 99  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32480237 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattca 32480138  T
Q  100 caaca 104  Q
    |||||    
T  32480137 caaca 32480133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24968002 - 24967961
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24968002 tggaggccatttgcactcatagattatctctatcacttgctc 24967961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 18656326 - 18656251
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | | ||||||||||| |||||||||||   |||| |||||||||||||||||    
T  18656326 tggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtt 18656251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 19355 - 19458
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19355 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcac 19454  T
Q  101 aaca 104  Q
    ||||    
T  19455 aaca 19458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14500 - 14603
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  14500 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcac 14599  T
Q  101 aaca 104  Q
    ||||    
T  14600 aaca 14603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 149146 - 149249
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  149146 tggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcac 149245  T
Q  101 aaca 104  Q
    ||||    
T  149246 aaca 149249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2441 - 2545
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2441 tggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcac 2540  T
Q  101 aacat 105  Q
    |||||    
T  2541 aacat 2545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24266393 - 24266497
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24266393 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 24266492  T
Q  101 aacat 105  Q
    |||||    
T  24266493 aacat 24266497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16879967 - 16879864
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16879967 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 16879868  T
Q  101 aaca 104  Q
    ||||    
T  16879867 aaca 16879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16884823 - 16884720
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16884823 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 16884724  T
Q  101 aaca 104  Q
    ||||    
T  16884723 aaca 16884720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 23152358 - 23152442
Alignment:
Q  121 atatctggttgtggttaggaaccaagttgaattgtgttttttatttatctactattggatgagttctccatagtatcacattgag 205  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23152358 atatctgattgtggttaggaaccaagttgaattgtgttttttatttatctactattggatgagttctccatagtatcacattgag 23152442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24261514 - 24261617
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  24261514 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcac 24261613  T
Q  101 aaca 104  Q
    ||||    
T  24261614 aaca 24261617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19992207 - 19992104
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttc-attagttgagccggattca 99  Q
    |||| ||||||||  ||||| ||||||| ||||||| ||||| ||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  19992207 tggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattca 19992109  T
Q  100 caaca 104  Q
    |||||    
T  19992108 caaca 19992104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 21812429 - 21812532
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||| ||||||||| ||||||||||| | ||||| ||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||  ||||||||    
T  21812429 tggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattca 21812527  T
Q  100 caaca 104  Q
    |||||    
T  21812528 caaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24024518 - 24024594
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  24024518 tggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 31109773 - 31109849
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||  |||||||||| ||||||| |||||||||||||||||    
T  31109773 tggagaccatttgttctcattgattatcactatcacttgctgcacacatcatt-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4866624 - 4866548
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  4866624 tggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12396806 - 12396730
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  12396806 tggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12406226 - 12406150
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  12406226 tggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 182155 - 182258
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  182155 tggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcac 182254  T
Q  101 aaca 104  Q
    ||||    
T  182255 aaca 182258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43988656 - 43988759
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  43988656 tggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcac 43988755  T
Q  101 aaca 104  Q
    ||||    
T  43988756 aaca 43988759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25445280 - 25445382
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||  ||||| ||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||| || || || ||||||||||    
T  25445280 tggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcac 25445378  T
Q  101 aaca 104  Q
    ||||    
T  25445379 aaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39445394 - 39445292
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||  | ||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| || || || ||||||||||    
T  39445394 tggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcac 39445296  T
Q  101 aaca 104  Q
    ||||    
T  39445295 aaca 39445292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 1055223 - 1055304
Alignment:
Q  22 gattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  1055223 gattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 41386643 - 41386566
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  41386643 tggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 44024063 - 44024140
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    |||| ||||||||  ||||| ||||||| |||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  44024063 tggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41398117 - 41398055
Alignment:
Q  16 ctcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| ||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  41398117 ctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19344315 - 19344211
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||||||||||||| ||||||||||| | ||||| ||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  19344315 tggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattca 19344217  T
Q  100 caacat 105  Q
    ||||||    
T  19344216 caacat 19344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19349173 - 19349070
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattca 99  Q
    |||||||||||||| ||||||||||| | ||||| ||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  19349173 tggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattca 19349075  T
Q  100 caaca 104  Q
    |||||    
T  19349074 caaca 19349070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32246679 - 32246577
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    ||||| |||||||  ||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||  || || || ||||||||||    
T  32246679 tggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcac 32246581  T
Q  101 aaca 104  Q
    ||||    
T  32246580 aaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39812178 - 39812255
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  39812178 tggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44312814 - 44312887
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaag 76  Q
    ||||| |||||||  ||||| ||||| | ||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  44312814 tggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18855621 - 18855518
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||  ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||  | || || ||||||||||    
T  18855621 tggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcac 18855523  T
Q  101 aacat 105  Q
    |||||    
T  18855522 aacat 18855518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3813918 - 3813816
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    ||||| |||||||| ||||| ||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||  || || || ||||||||||    
T  3813918 tggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcac 3813820  T
Q  101 aaca 104  Q
    ||||    
T  3813819 aaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 45348014 - 45348109
Alignment:
Q  7 ccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    |||||||  ||||||||||| | ||||||||||||| |||||||||| ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45348014 ccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 45357493 - 45357588
Alignment:
Q  7 ccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    |||||||  ||||||||||| | ||||||||||||| |||||||||| ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45357493 ccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9224597 - 9224698
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||  ||  |||| ||||||||||    
T  9224597 tggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcac 9224694  T
Q  101 aaca 104  Q
    ||||    
T  9224695 aaca 9224698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9229384 - 9229460
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  9229384 tggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5732556 - 5732481
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | | ||||||||||| |||||||||||   |||| |||||||||||||||||    
T  5732556 tggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtt 5732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9830 - 9907
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  9830 tggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 101 - 148
Alignment:
Q  31 tatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||||    
T  101 tatcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 6341 - 6293
Alignment:
Q  56 tttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaaca 6293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 257 - 155
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcac 100  Q
    |||| ||||||||  ||||| ||||||| | ||||||||||| ||||||| |||||||||| |||||||||||||||||| || || || ||||||||||    
T  257 tggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcac 159  T
Q  101 aaca 104  Q
    ||||    
T  158 aaca 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 34139 - 34216
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  34139 tggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 13228 - 13141
Alignment:
Q  16 ctcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 104  Q
    ||||| ||||||| ||||||||||||| ||| ||| |||||||||| |||||||||||||||||| || || || ||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 13141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35252 - 35328
Alignment:
Q  1 tggaggccatttgcactcatagattatctctatcacttgctctacacatcattggtttattctcattggtgtgaaggtt 79  Q
    ||||| |||||||  ||||| ||||| | ||||| ||||||| |||||||||| ||||||| |||||||||||||||||    
T  35252 tggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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