View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_49 (Length: 253)
Name: NF11625_low_49
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43350169 - 43349931
Alignment:
| Q |
1 |
cgtgtacagaaagccatcgtctgagatagttgggataaactcaaaggagaagacatagttttatttttctgacaccagaaaaagaagagaacttcacatg |
100 |
Q |
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| T |
43350169 |
cgtgtacagaaagccatcgtctgagatagttggggtaaactcaaaggagaagacatagttttatttttctgacaccagaaaaagaagagaacttcacatg |
43350070 |
T |
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| Q |
101 |
ggttatacaaatgatgcttgatcttgtgaagtctgcagataacatatcataggtgattacgactgacagggatatcacattgatgaattttgtcgccact |
200 |
Q |
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| T |
43350069 |
ggttattcaaattatgcttgatcttgtgaagtctgcagataacatatcataggtgattatgactgacatggatatcacattgatgaattttgtcgccact |
43349970 |
T |
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| Q |
201 |
gctttttctaaaactaccgcattattttgtcagattcat |
239 |
Q |
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| T |
43349969 |
gttttttctaaaactactgcattattttgtcagattcat |
43349931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 31446101 - 31446182
Alignment:
| Q |
151 |
aggtgattacgactgacagggatatcacattgatgaattttgtcgccactgctttttctaaaactaccgcattattttgtca |
232 |
Q |
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| T |
31446101 |
aggtgattgtgacagacaaggatatcacattgatgaatgatgtcgccattgttttcccttaaactaccgcattactttgtca |
31446182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 30178361 - 30178206
Alignment:
| Q |
78 |
gaaaaagaagagaacttcacatgggttatacaaatgatgcttgatcttgtgaagtctgcagataacatatcataggtgattacgactgacagggatatca |
177 |
Q |
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| T |
30178361 |
gaaaaagaggataacttaacttggattctacaaatgttgcttgatcttctgaactcaaaagacaacatgtcaaaggtgattgtgactggcaaggatatca |
30178262 |
T |
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| Q |
178 |
cattgatgaattttgtcgccactgctttttctaaaactaccgcattattttgtcag |
233 |
Q |
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| T |
30178261 |
cgttgatgactgttgtcgcaattgtttttccttaaactatcgtattagtttgtcag |
30178206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 13675855 - 13675733
Alignment:
| Q |
117 |
cttgatcttgtgaagtctgcagataacatatcataggtgattacgactgacagggatatcacattgatgaattttgtcgccactgctttttctaaaacta |
216 |
Q |
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| T |
13675855 |
cttgatcttatgaagtctaaagataatattccaaagatgattgtgactgacaggaatatcacactaatgaatgttgttgtcattgttttcactaaaacta |
13675756 |
T |
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| Q |
217 |
ccgcattattttgtcagattcat |
239 |
Q |
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| T |
13675755 |
ttgcattagtttgtcagattcat |
13675733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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