View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_52 (Length: 252)
Name: NF11625_low_52
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 33441448 - 33441219
Alignment:
| Q |
17 |
actgcaatcacatttatttatcatatcaaagcatcattcttaagtcatatctaagtattaatcataagatttttt-acacgtacatctaatctaatgcaa |
115 |
Q |
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| T |
33441448 |
actgcaatcacatttatttatcatatcaaagcatcattcttaagtcatatctaagtattaatcataagatttttttacacgtacatctaatt-----caa |
33441354 |
T |
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| Q |
116 |
agccacactacaatgtcatttttataggttaagtactaaaatgtttaagtaatatgatttgattgggcgtatgtgtaaaatagttttacactatcagtaa |
215 |
Q |
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| T |
33441353 |
agccacactacaatgtcatttttataggttaagtactaaaatgtttaagtaatatgatttgtttgggcgtatgtgtaaaatatttttacactatcagtaa |
33441254 |
T |
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| Q |
216 |
atacaaattaaattatgggttaatagtgctttacc |
250 |
Q |
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| T |
33441253 |
atacaaattaaattatgggttaacagtgctttacc |
33441219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33451665 - 33451628
Alignment:
| Q |
17 |
actgcaatcacatttatttatcatatcaaagcatcatt |
54 |
Q |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
33451665 |
actgcaatcacatttatttatcatatcaaagtatcatt |
33451628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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