View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11625_low_54 (Length: 250)
Name: NF11625_low_54
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_54 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32268408 - 32268167
Alignment:
| Q |
1 |
ctccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268408 |
ctccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgc |
32268309 |
T |
|
| Q |
101 |
catgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaatacttttggacgtgtagactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268308 |
catgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaatacttttggacgtgtagactg |
32268209 |
T |
|
| Q |
201 |
gtggagacgccagtcaacttatatcacttcacaattcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268208 |
gtggagacgccagtcaacttatatcacttcacaattcatctc |
32268167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 41900758 - 41900874
Alignment:
| Q |
82 |
gaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata |
181 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| | |||||||| |||| ||||| ||| ||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
41900758 |
gaagaggccatcttgttgacatgttttgatacaacctttgatggtcttgcttctgctctccgccagagaccaacattgaggtctttatcattttccaata |
41900857 |
T |
|
| Q |
182 |
cttttggacgtgtagac |
198 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
41900858 |
cttttggacctgtagac |
41900874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 27923045 - 27922867
Alignment:
| Q |
1 |
ctccgcaagattaatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgc |
100 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| ||||| ||||| ||| ||||||| ||||| |||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
27923045 |
ctccgcaaggttaatttctctggtcattccgacatcaatgacaaatcgcttctccatttgttcaaaagttgtaaggttctcgaagaggctatcatgttgc |
27922946 |
T |
|
| Q |
101 |
catgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaa |
179 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||| || || || ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
27922945 |
actgttttgacataacctttgatggaattgctaaagctctgcgcgagagaccaaccttgaggtctttatcattttccaa |
27922867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
| Q |
124 |
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcca |
178 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
18314967 |
ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca |
18315021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 1601214 - 1601177
Alignment:
| Q |
139 |
ctccgtgagagaccaacattgaggtctgtatccttttc |
176 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1601214 |
ctccgtgagagaccaacattgaggtctttatccttttc |
1601177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 21833652 - 21833689
Alignment:
| Q |
139 |
ctccgtgagagaccaacattgaggtctgtatccttttc |
176 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
21833652 |
ctccgtgagagaccaacattgagttctttatccttttc |
21833689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 19467792 - 19467838
Alignment:
| Q |
140 |
tccgtgagagaccaacattgaggtctgtatccttttccaatactttt |
186 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||| ||||| |
|
|
| T |
19467792 |
tccgtgagagaccaacattgaggtctttatcgttttgcaatgctttt |
19467838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 514008 - 514061
Alignment:
| Q |
124 |
ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcc |
177 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
514008 |
ggtattgcttctgctctccgtgagagaccaacattgacctctatatccttttcc |
514061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University