View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_56 (Length: 246)
Name: NF11625_low_56
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5807251 - 5807485
Alignment:
| Q |
1 |
atgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatattcgcgcaacatccttcccggatcttataacaactcatg |
100 |
Q |
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| T |
5807251 |
atgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatatttgcgcaacatccttcccggatcttatagcaactcatg |
5807350 |
T |
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| Q |
101 |
atgtagctaagaatggctagtgccacagctctgaataaagtctccttac------------aatatttctctttccaacccttgactttcttctgtatcc |
188 |
Q |
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| T |
5807351 |
atgtagctaagaatggctagtgccacagctctaaataaagtctccttacctgcgttggataaatatttctctttccaacccttgactttcttctgtagcc |
5807450 |
T |
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| Q |
189 |
tgtcttgaacaaaagcaaacatttcttttttggat |
223 |
Q |
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| T |
5807451 |
tgtcttgaacaaaaacaaacacttcttttttggat |
5807485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 39487511 - 39487412
Alignment:
| Q |
2 |
tgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatattcgcgcaacatccttcccggatcttataacaactcatga |
101 |
Q |
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| T |
39487511 |
tgaattttcctttgttgctct-tagaaccccaccaaaatttagataacatgctttcaatattagtgcagcacccttctggaatcttgtaacaactcatga |
39487413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 46033469 - 46033401
Alignment:
| Q |
155 |
ttctctttccaacccttgactttcttctgtatcctgtcttgaacaaaagcaaacatttcttttttggat |
223 |
Q |
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| T |
46033469 |
ttctctttccaccccttaactttcttccagacccgatcttgaacaaaagcaaacacttcttttttggat |
46033401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 46033634 - 46033507
Alignment:
| Q |
2 |
tgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatattcgcgcaacatccttcccggatcttataacaactcatga |
101 |
Q |
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||||||||||| |||||||||||||| |||||| | || ||||| | ||||| ||||||||| | ||| || |||| | ||||| |||||||||||| |
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| T |
46033634 |
tgaattttcctttgttgctctgtagaaccccaccagaatttagataacatgctttcaatattagtgcagcacccttttggaatcttgcaacaactcatga |
46033535 |
T |
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| Q |
102 |
tgtagctaagaatggctagtgccacagc |
129 |
Q |
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| T |
46033534 |
tataactagggatcgcttgtgccacagc |
46033507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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