View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_57 (Length: 244)
Name: NF11625_low_57
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 9334557 - 9334725
Alignment:
| Q |
66 |
tttacaagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaat |
165 |
Q |
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| T |
9334557 |
tttacgagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacactaggaggagaatataataaat |
9334656 |
T |
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| Q |
166 |
caaagagagttgttctttaggcactctttaattgtacaaaaaatgcaactattgttggttgagcctatg |
234 |
Q |
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| T |
9334657 |
caaagagagttgttctttaggcactctttaattgtaccaaaaatgcaactattgttggttgagcctatg |
9334725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 9941136 - 9941290
Alignment:
| Q |
8 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctacaggaaaaaa |
107 |
Q |
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| T |
9941136 |
cactgaaaattcagatatctaccttattctgcggcttggctttgctgttcccgtaacatttacaacttctgcttcccactcttttttctacag----aaa |
9941231 |
T |
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| Q |
108 |
gaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaatcaa |
168 |
Q |
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| T |
9941232 |
gaaaga--gagagaattggatacattacaatttacattaggaggagaatataacaaatcaa |
9941290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 8207599 - 8207699
Alignment:
| Q |
8 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctacaggaaaaaa |
107 |
Q |
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| T |
8207599 |
cactgaaaactcagatatctaccttattttgcggcttggctttgctgttccggtaacatttacaacttccgcttccaactcttttttctacagaaaaaaa |
8207698 |
T |
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| Q |
108 |
g |
108 |
Q |
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| T |
8207699 |
g |
8207699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9334523 - 9334562
Alignment:
| Q |
1 |
agaggatcactgaaaatccatatatctacgttattttacg |
40 |
Q |
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| T |
9334523 |
agaggatcactgaaaatccatatatctaccttattttacg |
9334562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 8207707 - 8207748
Alignment:
| Q |
128 |
tactttacaatttacattaggaggagaatataataaatcaaa |
169 |
Q |
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| T |
8207707 |
tactttacgatttacattaggaggaaaatataataaaccaaa |
8207748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 42362717 - 42362886
Alignment:
| Q |
8 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctac-aggaaaaa |
106 |
Q |
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| T |
42362717 |
cactgaaaactcagatatctaccttattttacggcttggctttgctattcccgtaacatttacaacttccgcttccaactcttttttctacaaaaaaaaa |
42362816 |
T |
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| Q |
107 |
agaaagaaagaga-------gaattggatactttacaatttacattaggaggagaatataataaatcaaa |
169 |
Q |
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| T |
42362817 |
ataaataaataaataaaaaggaattggaaaatttacagtttatattaggaggagaatataataaatcaaa |
42362886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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