View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_60 (Length: 240)
Name: NF11625_low_60
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 43350166 - 43350368
Alignment:
| Q |
1 |
cacgcttgctttatatgtgtagttcatgatcaaaacagacggaaatatgttaaataacttcacatatacatgatgagcccaaaatatatcatgaatagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43350166 |
cacgcttgctttatatgtgtagttcatgatcaaaacagacggaaatatgttaaataacttcacatatacatgatgagcccaaaatatatcatgaattgta |
43350265 |
T |
|
| Q |
101 |
gtagactcacatttgcttttacccttctgaacatatttatgatcatcccaacatttgaacaagtgtttcatctatgacttttcaactctaatagacttct |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43350266 |
gtagactcacatttgcttttacacttctgaacatatttatgatcatcccaacatttgaacaagtgtttcatctatgacttttcaactctaatagacttct |
43350365 |
T |
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| Q |
201 |
tga |
203 |
Q |
| |
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||| |
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| T |
43350366 |
tga |
43350368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 31445876 - 31445756
Alignment:
| Q |
72 |
gatgagcccaaaatatatcatgaatagtggtagactcacatttgcttttacccttctgaacatatttatgatcatcccaacatttgaacaagtgtttcat |
171 |
Q |
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||||||||||| |||||| ||| | | ||||| ||| |||||||| ||| ||| | ||||||||| | ||| ||| |||||| ||||| |||| ||| |
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| T |
31445876 |
gatgagcccaatatatatactgatcaatagtagaatcatatttgcttctacacttataaacatatttgttatcctccatacattttaacaactgttgcat |
31445777 |
T |
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| Q |
172 |
ctatgacttttcaactctaat |
192 |
Q |
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|| |||||||||||||||||| |
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| T |
31445776 |
ctctgacttttcaactctaat |
31445756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 46897620 - 46897516
Alignment:
| Q |
10 |
tttatatgtgtagttcatgatcaaaacagacggaaatatgttaaataacttcacatatacatgatgagcccaaaatatatcatgaatagtggtagactca |
109 |
Q |
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|||||| ||| ||| ||||||||||| || |||||| |||||||| ||||| | |||| || |||||||||||| ||| || |||| | | |||| |||| |
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| T |
46897620 |
tttataggtggagtgcatgatcaaaatagtcggaaaaatgttaaacaacttaatatattcaagatgagcccaaattatgtcttgaacaatagtagcctca |
46897521 |
T |
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| Q |
110 |
cattt |
114 |
Q |
| |
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||||| |
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| T |
46897520 |
cattt |
46897516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 14401465 - 14401514
Alignment:
| Q |
50 |
ttaaataacttcacatatacatgatgagcccaaaatatatcatgaatagt |
99 |
Q |
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||||| ||||| ||| || || |||||||||||||||||||||||||||| |
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| T |
14401465 |
ttaaacaacttaacagattcaggatgagcccaaaatatatcatgaatagt |
14401514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 44866989 - 44867033
Alignment:
| Q |
66 |
atacatgatgagcccaaaatatatcatgaatagtggtagactcac |
110 |
Q |
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||||||||||||||||||| ||||||| |||||| ||| |||||| |
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| T |
44866989 |
atacatgatgagcccaaaaaatatcataaatagttgtaaactcac |
44867033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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