View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_61 (Length: 238)
Name: NF11625_low_61
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 28667919 - 28667715
Alignment:
| Q |
1 |
aaattttcttccggatgtaaccaacggcactttgcaactgagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaa |
100 |
Q |
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| T |
28667919 |
aaattttcttccggatgtaactaacgacactttgcaactgagtgtccaagaatctgatagtgggagaaaaagtctgggtgccattcgtactccacaacaa |
28667820 |
T |
|
| Q |
101 |
cgggaaagcgaaaccttccctttcaacatcggtctcataaaaaatacgacgagaaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtt |
200 |
Q |
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| T |
28667819 |
cgggaaagcgaaaccttccctttcaacattggtctcataaaaaatacaacgagaaaatctatgtccactagcacccgcgtgtaatggccgaaggtgcgtt |
28667720 |
T |
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| Q |
201 |
tctga |
205 |
Q |
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||||| |
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| T |
28667719 |
tctga |
28667715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 17705285 - 17705212
Alignment:
| Q |
133 |
tctcataaaaaatacgacgagaaaa-tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
205 |
Q |
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| T |
17705285 |
tctcataaaaaaaccgacgagagaagtttatgtccaccagcacccgcgcataatggccaaaggtgcgtttctga |
17705212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 23869334 - 23869381
Alignment:
| Q |
158 |
tctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
205 |
Q |
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| T |
23869334 |
tctatatccaccagcacccgcacataatggccaaaggtgcgtttctga |
23869381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 25276207 - 25276248
Alignment:
| Q |
164 |
tccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
205 |
Q |
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| T |
25276207 |
tccaccagcacctgcgtgtaatggccaaatgtgcgtttctga |
25276248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 14782999 - 14782943
Alignment:
| Q |
40 |
gagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccacc |
96 |
Q |
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| T |
14782999 |
gagtgtccaagaatctgacaatgtgagtagaattcagggagccattcgtactccacc |
14782943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 23646201 - 23646030
Alignment:
| Q |
37 |
actgagtgtccaagaatctgatagtgggagtaaaagtctgggagccattcgtactccaccgcaacgggaaagcgaaaccttccctttcaacatcggtctc |
136 |
Q |
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||||||||||||||||| ||| | | ||| | || || |||||||| |||||||||||| ||| |||||||||| |||||||| || || | |||| |
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| T |
23646201 |
actgagtgtccaagaatttgacaatatgagcagaattcagggagccactcgtactccacctcaataggaaagcgaacccttccctctccaccatgatctc |
23646102 |
T |
|
| Q |
137 |
ataaaaaata--cgacgaga-aaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcgtttctga |
205 |
Q |
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||||||| | |||||||| || ||||| ||||| ||||||| || |||| ||||||||||||| ||||| |
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| T |
23646101 |
ttaaaaaaaaaccgacgagagaagtctatatccactagcacccacgcataattgccaaaggtgcgtatctga |
23646030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 26798038 - 26798082
Alignment:
| Q |
154 |
aaaatctatgtccaccagcacccgcgtgtaatggccaaaggtgcg |
198 |
Q |
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| T |
26798038 |
aaaatctacgtccaccagcacccgcgcataatggccaaatgtgcg |
26798082 |
T |
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