View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_65 (Length: 214)

Name: NF11625_low_65
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_65
NF11625_low_65
[»] chr5 (3 HSPs)
chr5 (105-214)||(42454765-42454874)
chr5 (91-137)||(19321612-19321658)
chr5 (81-135)||(35618311-35618361)
[»] chr8 (4 HSPs)
chr8 (81-142)||(17702730-17702791)
chr8 (137-212)||(17702528-17702603)
chr8 (81-142)||(23265865-23265926)
chr8 (90-142)||(34139868-34139920)
[»] chr3 (5 HSPs)
chr3 (81-138)||(29715880-29715937)
chr3 (81-137)||(21382154-21382210)
chr3 (87-142)||(1553769-1553824)
chr3 (81-131)||(3116628-3116678)
chr3 (137-201)||(52121224-52121288)
[»] chr4 (4 HSPs)
chr4 (81-125)||(22492928-22492972)
chr4 (81-128)||(3691292-3691339)
chr4 (86-142)||(27982127-27982183)
chr4 (86-142)||(49069437-49069493)
[»] chr1 (3 HSPs)
chr1 (81-142)||(8829511-8829572)
chr1 (137-201)||(14334204-14334268)
chr1 (84-142)||(5368923-5368983)
[»] chr7 (1 HSPs)
chr7 (89-118)||(31191037-31191066)
[»] scaffold0240 (1 HSPs)
scaffold0240 (86-142)||(10833-10889)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 42454874 - 42454765
Alignment:
Q  105 atatatcacaaaaagagaacactattacctagttaattttcggatactctcccattgcgtatcgaggagtatcggacatgtatcagtgcatgatacgata 204  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42454874 atatatcacaaaaagagaacaatattacctagttaattttcggatactctcccattgcgtatcgaggagtatcggacatgtatcagtgcatgatacgata 42454775  T
Q  205 tgataccggt 214  Q
    ||||||||||    
T  42454774 tgataccggt 42454765  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 19321658 - 19321612
Alignment:
Q  91 caattacatatatgatatatcacaaaaagagaacactattacctagt 137  Q
    ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  19321658 caattacatatatgatatatctcaaaaagagaacattattacttagt 19321612  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 35618361 - 35618311
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattaccta 135  Q
    ||||||||||||||||||||    ||||||| |||||||||||||||||||||||    
T  35618361 gacagttagtcaattacata----atatatcccaaaaagagaacactattaccta 35618311  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 17702791 - 17702730
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  17702791 gacatttagtcaattacatatatgatatatccaaaaaagataacactattacctagtcaatt 17702730  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 17702603 - 17702528
Alignment:
Q  137 ttaattttcggatactctcccattgcgtatcgaggagtatcggacatgtatcagtgcatgatacgatatgataccg 212  Q
    ||||||||| |||||||||||  | ||||||||||||||||||  | ||||| || || |||||||||||||||||    
T  17702603 ttaattttcagatactctcccgatacgtatcgaggagtatcgggaaggtatcggtacacgatacgatatgataccg 17702528  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 23265926 - 23265865
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    |||| |||||||| |||||||||||||||||| ||| ||| |||| |||||| |||| ||||    
T  23265926 gacaattagtcaactacatatatgatatatcataaatagaaaacattattacttagtcaatt 23265865  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 34139920 - 34139868
Alignment:
Q  90 tcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    |||||||||||| ||||||||| |||||||| ||||| |||||| ||| ||||    
T  34139920 tcaattacatatgtgatatatcccaaaaagaaaacaccattaccgagtcaatt 34139868  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 29715937 - 29715880
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattacctagtt 138  Q
    |||| ||||||||||||||||||||||||||  |||||||||||| |||||| |||||    
T  29715937 gacaattagtcaattacatatatgatatatccaaaaaagagaacattattacttagtt 29715880  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 21382154 - 21382210
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattacctagt 137  Q
    |||| |||||| ||||||||||||||||||| || ||||||||||||||||| ||||    
T  21382154 gacaattagtcgattacatatatgatatatcccataaagagaacactattacttagt 21382210  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 1553769 - 1553824
Alignment:
Q  87 tagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||| |||| ||||    
T  1553769 tagtcaattacatatatgatatattctaaaaagagaacaccattacttagtcaatt 1553824  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 3116678 - 3116628
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactatta 131  Q
    |||| |||||| | |||||||||||||||||||| ||| ||||||||||||    
T  3116678 gacaattagtcgaatacatatatgatatatcacataaatagaacactatta 3116628  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 52121288 - 52121224
Alignment:
Q  137 ttaattttcggatactctcccattgcgtatcgaggagtatcggacatgtatcagtgcatgatacg 201  Q
    ||||| || ||||||||||||  | ||||||||| ||||||||||| |||| |||||| ||||||    
T  52121288 ttaatatttggatactctcccgatacgtatcgagaagtatcggacaggtattagtgcaggatacg 52121224  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 22492928 - 22492972
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaaca 125  Q
    |||| |||||||||||||||||||||||||| |||||||||||||    
T  22492928 gacaattagtcaattacatatatgatatatcccaaaaagagaaca 22492972  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 3691292 - 3691339
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacacta 128  Q
    |||| |||||||||||||||||||||||||  |||||||| |||||||    
T  3691292 gacaattagtcaattacatatatgatatattccaaaaagaaaacacta 3691339  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 27982183 - 27982127
Alignment:
Q  86 ttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    ||||||||||||||||||||||||||| ||| ||| ||||  ||||| |||| ||||    
T  27982183 ttagtcaattacatatatgatatatcataaatagaaaacatcattacttagtcaatt 27982127  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 49069493 - 49069437
Alignment:
Q  86 ttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    ||||||||||||||||||||||||||  ||| ||| ||||  ||||| |||||||||    
T  49069493 ttagtcaattacatatatgatatatcctaaatagaaaacatcattacttagttaatt 49069437  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 8829511 - 8829572
Alignment:
Q  81 gacagttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    |||| ||||||||||||||||||||||||||  ||| ||||||||| ||||| |||| ||||    
T  8829511 gacaattagtcaattacatatatgatatatcctaaatagagaacacaattacttagtcaatt 8829572  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 14334268 - 14334204
Alignment:
Q  137 ttaattttcggatactctcccattgcgtatcgaggagtatcggacatgtatcagtgcatgatacg 201  Q
    ||||| || ||||||||||||| | ||||||| ||||||||||||| ||||| ||||| ||||||    
T  14334268 ttaatatttggatactctcccaatacgtatcggggagtatcggacaggtatcggtgcaagatacg 14334204  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 5368983 - 5368923
Alignment:
Q  84 agttagtcaattacatatatgatatat--cacaaaaagagaacactattacctagttaatt 142  Q
    |||||| ||||||| ||||||||||||  | |||||| |||||||||||||||||| ||||    
T  5368983 agttagacaattacgtatatgatatatatcccaaaaatagaacactattacctagtcaatt 5368923  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 31191066 - 31191037
Alignment:
Q  89 gtcaattacatatatgatatatcacaaaaa 118  Q
    ||||||||||||||||||||||||||||||    
T  31191066 gtcaattacatatatgatatatcacaaaaa 31191037  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 10889 - 10833
Alignment:
Q  86 ttagtcaattacatatatgatatatcacaaaaagagaacactattacctagttaatt 142  Q
    ||||||||||||||||||||||||||| ||| ||| ||||  ||||| |||| ||||    
T  10889 ttagtcaattacatatatgatatatcataaatagaaaacatcattacttagtcaatt 10833  T

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