View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_7 (Length: 575)

Name: NF11625_low_7
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_7
NF11625_low_7
[»] chr8 (1 HSPs)
chr8 (84-557)||(12401082-12401553)
[»] chr7 (1 HSPs)
chr7 (126-167)||(24966009-24966050)
[»] chr1 (4 HSPs)
chr1 (126-167)||(10663118-10663159)
chr1 (120-158)||(31625963-31626001)
chr1 (119-167)||(38221482-38221530)
chr1 (123-159)||(40188831-40188867)
[»] chr6 (1 HSPs)
chr6 (120-159)||(9024045-9024084)
[»] chr2 (1 HSPs)
chr2 (120-167)||(36159456-36159503)
[»] chr4 (1 HSPs)
chr4 (179-215)||(24001565-24001601)


Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 84 - 557
Target Start/End: Complemental strand, 12401553 - 12401082
Alignment:
Q  84 cggttaagagtatcgcattcgattgaatattgtgtgaaatgtgtttataagtgggagacatctcttaccttacaagttggttttaacttttaactcaacc 183  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12401553 cggttaagagtatcgcattggattgaatattgtgtgaaatgtgtttataagtgagagacatctcttaccttacaagttggttttaacttttaactcaacc 12401454  T
Q  184 caaattctgagatagtatgagagtctatccaaaatttgttggtccatccgctatcaggtcagtcaagttacgctccagatgtccagtcttaggcatgagg 283  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||     
T  12401453 caaattctgagatagtttgagagtctatccaaaatttgttggaccatccgctatcaggtcagtcaagctacgctccagatgtctagtcttaggcatgagt 12401354  T
Q  284 aaataatattgaaaatcccacatttgatgcggatatggcttgaataatgtgtttataagtgataaacatctctcatcttattagtcggttttgtatgatc 383  Q
     | |||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12401353 ga-taatgttcaaaatcccacatttgatgcg-atatggcctgaataatgtgtttataagtgataaacatctctcatcttattagtcggttttgtatgatc 12401256  T
Q  384 gagttaagttctaacatatgtacatttttctttaaattgtttattacatcaacctttttcattgcaggtacactaaactagatacctgcttgaccccact 483  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12401255 gagttaagttctaacagatgtacatttttctttaaattgtttattacatcaacctttttgattgcaggtacactaaactagatacctgcttgaccccact 12401156  T
Q  484 gccagatgtaaacaacgtcaaagaagttgctggtggagaaatatcaaagtggccaaagagactaacttcaattc 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12401155 gccagatgtaaacaacgtcaaagaagttgctggtggagaaatatcaaagtggccaaagagactaacttcaattc 12401082  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 24966050 - 24966009
Alignment:
Q  126 gtttataagtgggagacatctcttaccttacaagttggtttt 167  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  24966050 gtttataagtgggagacatctctcaccttacacgttggtttt 24966009  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 10663118 - 10663159
Alignment:
Q  126 gtttataagtgggagacatctcttaccttacaagttggtttt 167  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  10663118 gtttataagtgggagacatttctcaccttacaagttggtttt 10663159  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 31626001 - 31625963
Alignment:
Q  120 aaatgtgtttataagtgggagacatctcttaccttacaa 158  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  31626001 aaatgtgtttataagtgggaggcatctctcaccttacaa 31625963  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 38221482 - 38221530
Alignment:
Q  119 gaaatgtgtttataagtgggagacatctcttaccttacaagttggtttt 167  Q
    ||||||| ||| ||||||||||||||| || ||||||||||||| ||||    
T  38221482 gaaatgtatttttaagtgggagacatccctcaccttacaagttgttttt 38221530  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 40188831 - 40188867
Alignment:
Q  123 tgtgtttataagtgggagacatctcttaccttacaag 159  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  40188831 tgtgcttataagtgggaggcatctcttaccttacaag 40188867  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 9024045 - 9024084
Alignment:
Q  120 aaatgtgtttataagtgggagacatctcttaccttacaag 159  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  9024045 aaatgtgtttataagtgcgagacatctcttcccttacaag 9024084  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 36159456 - 36159503
Alignment:
Q  120 aaatgtgtttataagtgggagacatctcttaccttacaagttggtttt 167  Q
    ||||||||||||| || |||||||||||| ||||||||||| ||||||    
T  36159456 aaatgtgtttatacgtaggagacatctctcaccttacaagtcggtttt 36159503  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 24001565 - 24001601
Alignment:
Q  179 caacccaaattctgagatagtatgagagtctatccaa 215  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  24001565 caacccaaattctaagatagtatcagagtctatccaa 24001601  T

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