View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_9 (Length: 555)
Name: NF11625_low_9
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 6317615 - 6318151
Alignment:
| Q |
1 |
aattagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6317615 |
aattagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaattctagcctttatctcaaa |
6317714 |
T |
|
| Q |
101 |
ccaaaccctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttggagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6317715 |
ccaaaccctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttcgagg |
6317814 |
T |
|
| Q |
201 |
aaacttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaat-ctggttttggtgttgttgttccaagaggaaacttgatcagtgaa |
299 |
Q |
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| T |
6317815 |
aaacttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaattctggttttggtgttgttgttccaagaggaaacttgatcagtgaa |
6317914 |
T |
|
| Q |
300 |
atatggtcatatgatttatgtaaacttgagaaaaccaggggagtggacaaagttatggaggttaagagtaccaaaaaaggttgatcgcagacgagagaaa |
399 |
Q |
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| T |
6317915 |
atatggtcatatgatttatgtaaacttgagaaaaccaggggagtggacaaagttatggaggttaagagtaccaaaaaaggttgatcgcagacgagagaaa |
6318014 |
T |
|
| Q |
400 |
aactcataacaagaggggtacaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatatcttgtttgaatgccaagaggctat |
499 |
Q |
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| T |
6318015 |
aactcataacaagaggggttcaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatatcttgtttgaatgccaagaggctat |
6318114 |
T |
|
| Q |
500 |
aaaagtttgggagtatagtgacatatgaccttaaatt |
536 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
6318115 |
aaaagtttgggagtatagtgaaatatgaccttaaatt |
6318151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6297870 - 6297997
Alignment:
| Q |
1 |
aattagcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaa |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || ||||||| ||| ||| |||||| |
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| T |
6297870 |
aattagcccaggaaactgaatcagattcaataaaaggtttaactttcttgatcgaaagaggcttgagtctgctgtcctcaactcgggccattacctcaaa |
6297969 |
T |
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| Q |
101 |
ccaaaccctttcaactcttggccttgtt |
128 |
Q |
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||| ||||||||||| |||||||||||| |
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| T |
6297970 |
ccagaccctttcaacacttggccttgtt |
6297997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 6299943 - 6299993
Alignment:
| Q |
224 |
agaactgagttgattaatgagtgaagctaaatctggttttggtgttgttgt |
274 |
Q |
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| T |
6299943 |
agaactgagttgatcaacaagagaagctaaatctggttttggtgttgttgt |
6299993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 33186418 - 33186384
Alignment:
| Q |
126 |
gttttgtgagactctctaggagaacttatgaaaac |
160 |
Q |
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| T |
33186418 |
gttttgtgagactgtctaggagaacttatgaaaac |
33186384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 392 - 475
Target Start/End: Original strand, 55983907 - 55983990
Alignment:
| Q |
392 |
gagagaaaaactcataacaagaggggtacaatgtcaaacttcttgtcctttttgtgaaggggaaaatgaaagtgattgacatat |
475 |
Q |
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||||||||||||||||| | ||||||| |||||||||| ||| ||||||||| | |||| |||||||||||||||||||||||| |
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| T |
55983907 |
gagagaaaaactcataagacgaggggttcaatgtcaaatttcatgtccttttagagaagaggaaaatgaaagtgattgacatat |
55983990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 55983824 - 55983861
Alignment:
| Q |
340 |
gagtggacaaagttatggaggttaagagtaccaaaaaa |
377 |
Q |
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| T |
55983824 |
gagtggacaaagttgtggaggttaagagtaccaaaaaa |
55983861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 34034210 - 34034175
Alignment:
| Q |
126 |
gttttgtgagactctctaggagaacttatgaaaaca |
161 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
34034210 |
gttttgtgagactctttaggagaacttatgaaaaca |
34034175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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