View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_high_16 (Length: 413)
Name: NF11626_high_16
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 40804223 - 40803844
Alignment:
| Q |
19 |
tgctatatattttgaaagaatacattttcgctatgattttttatggtccatatctccatatatggtaattctttacatggcttgtgaacatgtctaagtt |
118 |
Q |
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| T |
40804223 |
tgctatatattttgaaagaatacattttcgctatgattttttatggtccatatttccatatatggtaattctttacatggcttgtgaacatgtctaagtt |
40804124 |
T |
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| Q |
119 |
ttcatctttaaagtatgtaccttatgtgttttcacaactggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcataattcaatc |
218 |
Q |
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| T |
40804123 |
ttcatctttaaagtatgtaccttatgtgttttcacaactggatatggtccaaattgtaatgatactgagtttgaatctttgatattttcgtaattcaatc |
40804024 |
T |
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| Q |
219 |
nnnnnnnnnaattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaattctcaactctgtctcctgcatattcgctgat |
318 |
Q |
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| T |
40804023 |
tttttttttaattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaattctcaacactgtctcctgcatattcgctgat |
40803924 |
T |
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| Q |
319 |
tcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctcagtttttatacagtttctatattctgtg |
398 |
Q |
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| T |
40803923 |
tcagctattatgtacatgcttgccctttctgttaagttgtttattaatcctcagtttctatacagtttctatattctgtg |
40803844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 389
Target Start/End: Complemental strand, 52517203 - 52517030
Alignment:
| Q |
228 |
aattggtcactactccatatgaattagtttctgcagaggacatgcattttttattgaaatt---------------ctcaactctgtctcctgcatattc |
312 |
Q |
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| T |
52517203 |
aattggttactactcaatatgaactagtttctgcagatggcatgcattttttattgaaattttcatggttattttactcaactttgtctcctgcatcctc |
52517104 |
T |
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| Q |
313 |
gctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctc--agtttttatacagtttcta |
389 |
Q |
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| T |
52517103 |
cctgatt-agcttttatgtaca----agccctttctgttaagttgtttattaatcctcaaagtttctatacagtttcta |
52517030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 41031528 - 41031711
Alignment:
| Q |
228 |
aattggtcactactccatatgaattagtttctgcagagga--catgcattttttattgaaatt---------------ctcaactctgtctcctgcatat |
310 |
Q |
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| T |
41031528 |
aattggttactactcaatatgaactagtttctgcagaggattcatgcattttttattgaaattttcatggttcttttactcaactctgtctcctgcatct |
41031627 |
T |
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| Q |
311 |
tcgctgattcagcttttatgtacatgcttgccctttctgttaagttgtttattaatcctc--agtttttatacagtttctatattctgt |
397 |
Q |
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| T |
41031628 |
tccctgattcagcttttatctaca----agccctttct-ttaagttgtttattaatcctcaaagtttctttacagtttctatattctgt |
41031711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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