View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_high_17 (Length: 386)
Name: NF11626_high_17
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 368
Target Start/End: Original strand, 38555350 - 38555711
Alignment:
| Q |
3 |
gttcgactaaatatcctcaattgcatttccttttgcttcaagtgattgatactaaggaaagaactttatctctctgttatggatttcctaacttttcaag |
102 |
Q |
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| T |
38555350 |
gttcgactaaatatcctcaattatgtatccttttgcttcaagcgattga-actgaggaaagaactttgtctctcagttatggatttcctaacttttcaag |
38555448 |
T |
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| Q |
103 |
cataacattatgtacaattannnnnnnnnnnnnnnn-agcatcactaagaaactcataaaagtatagataaaggtagaaaagtaaagagatgaaa-tgcg |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
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| T |
38555449 |
cataacattatgtacaattgtttttttggatttttttagcatcactaagaaactcataaaagta--gataaaggtagaaaagtaaagagatgaaaatgtg |
38555546 |
T |
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| Q |
201 |
aattaaatttgttcgtttgattggatgtgtcgattacaatatataaactcaatatttatagccaaaaactatgactattatccgaacaatgtgtcctaca |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
38555547 |
aattaagcttgttcgtttgattggatgtgtcgattacaagatataaactcaatatttatagccaaaaactatggctattatccgaacaa---gtcctaca |
38555643 |
T |
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| Q |
301 |
gtgagtaatccttactcggctatctttgcgggtaatttatgaatattccttgctcttgggattgtgat |
368 |
Q |
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||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38555644 |
gtgagtagtccttacccggctatctttgcgggtaatttgtgaatattccttgctcttgggattgtgat |
38555711 |
T |
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