View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_high_20 (Length: 343)
Name: NF11626_high_20
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 53491346 - 53491020
Alignment:
| Q |
1 |
tagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491346 |
tagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaata |
53491247 |
T |
|
| Q |
101 |
aatcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491246 |
aatcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgc |
53491147 |
T |
|
| Q |
201 |
tcaatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491146 |
tcaatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaa |
53491047 |
T |
|
| Q |
301 |
tcaaagaaagatgatcttagctccttg |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53491046 |
tcaaagaaagatgatcttagctccttg |
53491020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 53498936 - 53498616
Alignment:
| Q |
5 |
aaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatc |
104 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
53498936 |
aaataaacaggttatctatgttgtcctgttgttgctcttatattctcacat--gtcattttgcttctaccctgtatgttcaatgagacaccaaataaatc |
53498839 |
T |
|
| Q |
105 |
acttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaa |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
53498838 |
acttcaattttgcacaggtttgtgttgttcgacgtgataatggagcaaagattcacattgctaatgctgatttggttgaagaaattagaaagttcctcaa |
53498739 |
T |
|
| Q |
205 |
tatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatcaa |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498738 |
taatattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatcaa |
53498639 |
T |
|
| Q |
305 |
agaaagatgatcttagctccttg |
327 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53498638 |
agaaagatgatcttagctccttg |
53498616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 5 - 327
Target Start/End: Complemental strand, 16070022 - 16069700
Alignment:
| Q |
5 |
aaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatg-agataccaaataaat |
103 |
Q |
| |
|
||||||||||||||| ||||||| | || |||| ||| ||||||| ||||||||||| ||||| || ||||| ||||||| | | | ||| |||| |
|
|
| T |
16070022 |
aaataagcaggttattaatgttgttatattattgcacttgtattctttcatatgtcattatgcttttatcttttattttcaatgcaaacatcaa-taaac |
16069924 |
T |
|
| Q |
104 |
cacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctca |
203 |
Q |
| |
|
| ||||||||| || ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
16069923 |
cttttcaattttgcataggtttgtgttgttcgacgtgataatggtgcaaagattgacattgctaatgctgatttagttgaagaaataaaaaagttgctca |
16069824 |
T |
|
| Q |
204 |
atatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatca |
303 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
16069823 |
ataatgttcaacaaaatatgttggatgttgcaaaacagaaacgagatgaatgtattcaagtcatacatacatgggatgagtttgtagaagctttgaatca |
16069724 |
T |
|
| Q |
304 |
aagaaagatgatcttagctccttg |
327 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
16069723 |
aaggaagatgatcttaggtccttg |
16069700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 327
Target Start/End: Original strand, 45355538 - 45355755
Alignment:
| Q |
110 |
aatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaatatca |
209 |
Q |
| |
|
|||||| ||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||| ||| | |
|
|
| T |
45355538 |
aattttgcacaggtccgtgctgttcgtcgtgatagcggagcaaagatcgacattggtaatgatgatttggttgtggaaataaagaagttgctcgataata |
45355637 |
T |
|
| Q |
210 |
ttcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatcaaagaaa |
309 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||| ||||| || |||||||||| ||| ||| |
|
|
| T |
45355638 |
ttcaacagaatttgtttgatgtcgcaaaacacaaacgagatgcatgtattcagatcatacatacatgggatgagtttgtagcagctttgaatgaaaaaaa |
45355737 |
T |
|
| Q |
310 |
gatgatcttagctccttg |
327 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45355738 |
gatgatcttagctccttg |
45355755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University