View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11626_high_22 (Length: 341)

Name: NF11626_high_22
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11626_high_22
NF11626_high_22
[»] chr8 (1 HSPs)
chr8 (19-308)||(44449998-44450282)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 44450282 - 44449998
Alignment:
Q  19 gttataagtcaagtgttggtggttactaatgacaaaaggatagtgataatgacagttgtgttgtgagtggagtttctgtttggcaagatctaagatgcaa 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  44450282 gttataagtcaagtgttggtggttactaatggcaaaaggatagtgataatgacagttgtg-----agtggagtttctgtttggcaagatctaagatgcaa 44450188  T
Q  119 aagacaggtgtttacattcattgtggatggaactttttattttatatatagattaacaaataaaaatgcctcaaagcatggctatgaactcaacgattgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44450187 aagacaggtgtttacattcattgtggatggaactttttattttatatatagattaacaaataaaaatgcctcaaagcatggctatgaactcaacgattgt 44450088  T
Q  219 accatgtcataacccactacatgcctacaccattgccttacttttatccaaggcttccctcccttgcccaactgctaaggatgctttcga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44450087 accatgtcataacccactacatgcctacaccattgccttacttttatccaaggcttccctcccttgcccaactgctaaggatgctttcga 44449998  T

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