View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_high_26 (Length: 297)
Name: NF11626_high_26
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 31695650 - 31695363
Alignment:
| Q |
1 |
ctgtatatgtacaacaagtcgctaacaaatacgtaccatatcttagactatactactctcatccatataagtttnnnnnnncgataagcaaatattaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
31695650 |
ctgtatatgtacaacaagtcgctaacaaatacgtatcatatcttagactatactactctcatccatataaatataaaaaaacgataagcaaatattaaaa |
31695551 |
T |
|
| Q |
101 |
acaatgattaaggataaatgtgcaatattacaattataaaataaagtcactaaaagataaagtacttactagttcgtttcgtctcattccctaaatttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31695550 |
acaatgattaaggataaatgtgcaatattacacttataaaataaagtcactaaaagataaagtacttactagttcgtttcgtctcattccctaaaattta |
31695451 |
T |
|
| Q |
201 |
agggaaaa--attgatttgcggagtaaagtt----actaattcatttcatctcatttcttcgattgttaaaaaattaaataatgtttg |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31695450 |
agggaaaaatattgatttgcggagtaaagttactaactaattcatttcatctcatttcttcgattgttaaaaaattaaataatgtttg |
31695363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University