View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_high_36 (Length: 243)
Name: NF11626_high_36
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_high_36 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 7025381 - 7025158
Alignment:
| Q |
20 |
tcctagatgtaacttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgag |
119 |
Q |
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| T |
7025381 |
tcctagatgtaacttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgag |
7025282 |
T |
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| Q |
120 |
gtcactgagaattccttcagtgctgtacaattgtagagggagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatc |
219 |
Q |
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| T |
7025281 |
gtcactgagaattccttcagtgatgtacaattgtagagggagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatc |
7025182 |
T |
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| Q |
220 |
cactcagatccaatttcttaagct |
243 |
Q |
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| T |
7025181 |
cactcagatccagtttcttaagct |
7025158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 7038437 - 7038238
Alignment:
| Q |
38 |
aagtttggtttgaagtccaattgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggtcactgagaattccttc |
137 |
Q |
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| T |
7038437 |
aagtttgctttgaagtccaattgatgagggtagttctttgatactcgtgccatctaaattcaatacgctcatatgctttgaagtcactgagaattccttc |
7038338 |
T |
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| Q |
138 |
agtgctgtacaattgtagagggagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatccactcagatccaatttct |
237 |
Q |
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| T |
7038337 |
agtgctgtgcagttgtagagggagagataactaagggaacttaaatgagtattgctttgaaggcttgtaagggaaatgcatccactcaaatccagtttct |
7038238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 7032759 - 7032547
Alignment:
| Q |
22 |
ctagatgtaacttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgaggt |
121 |
Q |
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| T |
7032759 |
ctagatataacttttcaagtttggtttgaagtccaattgatgagggtagatttttgatactcgtgccttctaaatccaatatgttcatatgttttgaggt |
7032660 |
T |
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| Q |
122 |
cactgagaattccttcagtgctgtacaattgtagagggagagatcactaagggagattaattgggt---attgctttgaaggcttgtaagggaaatgcat |
218 |
Q |
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| T |
7032659 |
cactgagaattccttcactgatgtgcagttgtagagggagagatacctaagggaacttaaatgggtgtcattgctttgaaggctcgtaagggaaatgcat |
7032560 |
T |
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| Q |
219 |
ccactcagatcca |
231 |
Q |
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| T |
7032559 |
ccactcagatcca |
7032547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 7073573 - 7073790
Alignment:
| Q |
20 |
tcctagatgtaacttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatactcgtgcgttctaaattcaatttcttcatattctttgag |
119 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||| || | || ||||||||| ||| ||||||||| || | || ||||||| ||| |
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| T |
7073573 |
tcctagatataacttttcaagtttggtttgtagtccaattgatgatggtaattctttgatactagtgagttctaaatctaactcgtttatattctccgag |
7073672 |
T |
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| Q |
120 |
gtcactgagaattccttcagtgctgtacaattgtagagggagagatcactaagggagattaattgggtattgctttgaaggcttgtaagggaaatgcatc |
219 |
Q |
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| T |
7073673 |
gtcactgagaattccttcagtgctgtgcagttgtagagggagagataactaagggaacttaaatgagtattgctttgaaggcttttcagggaactgcatc |
7073772 |
T |
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| Q |
220 |
cactcagatccaatttct |
237 |
Q |
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| T |
7073773 |
cactcagatccaatttct |
7073790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 7067212 - 7067263
Alignment:
| Q |
30 |
aacttttcaagtttggtttgaagtccaattgatgagggcacttgtttgatac |
81 |
Q |
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| T |
7067212 |
aacttttcaagtttggtttgaagtcctattgatgatgacagttgtttgatac |
7067263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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