View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11626_high_37 (Length: 240)

Name: NF11626_high_37
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11626_high_37
NF11626_high_37
[»] chr1 (2 HSPs)
chr1 (1-223)||(26094080-26094305)
chr1 (1-123)||(26105512-26105634)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26094080 - 26094305
Alignment:
Q  1 caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26094080 caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa 26094179  T
Q  101 attaaccgaatctagcataaaaattag---nnnnnnnncctcagtcataacaaattatcagcatatcataacatgtaatttagtcttcacagattaagaa 197  Q
    |||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26094180 attaaccgaatctagcataaaaattagaaaaaaaaaaacctcagtcataaaaaattatcagcatatcataacatgtaatttagtcttcacagattaagaa 26094279  T
Q  198 aaacaataatactcagttgtagaatg 223  Q
    ||||||||||||||||||||||||||    
T  26094280 aaacaataatactcagttgtagaatg 26094305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26105512 - 26105634
Alignment:
Q  1 caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa 100  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||| ||| |  | || |||||||| |||  |||||||||||||||||||||||||||    
T  26105512 caagatccactggactttgtgctttcccatttgaacatgccgcgaaagatggactcagagttccccacttctcaggaccatttggtccaatataactaaa 26105611  T
Q  101 attaaccgaatctagcataaaaa 123  Q
    |||||||||||||||||||||||    
T  26105612 attaaccgaatctagcataaaaa 26105634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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