View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_10 (Length: 478)
Name: NF11626_low_10
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 49916962 - 49916508
Alignment:
| Q |
18 |
cttccatctttaaatctaggtcaattgatgctgcagccagannnnnnngccaattgcatagcaaaatagctggtattaatttcctaacccttttggctac |
117 |
Q |
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| T |
49916962 |
cttccatctttaaatctaggtcaattgatgctgcagccagatttttttgccaattgcatagcaaaatagctggtattaatttcctaacccttttggctac |
49916863 |
T |
|
| Q |
118 |
aaaatgtccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattcctagcatcagcaacaaattaattacaacatt |
217 |
Q |
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| T |
49916862 |
aaaatgtccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattcctagcatcagcaacaaattaattacaacatt |
49916763 |
T |
|
| Q |
218 |
ataataattcctacattaatctaatctataacacaacacagtatataaattttttcctgattgcatacctcccaaacaataagacgatcttggttgactc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49916762 |
ataataattcctacattaatctaatctataacacaacacagtatataaattttttccagattgcatacctcccaaacaataagacgatcttggttgactc |
49916663 |
T |
|
| Q |
318 |
ctttttggcctctatgtgtaaaaacagaaacaaaactattatccttgttggccttaacaactccagaggaactcaataacaattcattctttcttgcttc |
417 |
Q |
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| T |
49916662 |
ctttttggcctctatgtgtaaaaacagaaacaaaactattatccttgttggccttaacaactccagaggaactcaataacaattcattctttcttgcttc |
49916563 |
T |
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| Q |
418 |
ctttgccaattcttccacagctttccttgcatcatcctttcgaaaattcttctct |
472 |
Q |
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| T |
49916562 |
ctttgccaattcttccacagctttccttgcatcatcctttcgaaaattcttctct |
49916508 |
T |
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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 13735685 - 13735776
Alignment:
| Q |
104 |
acccttttggctacaaaatgtccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattcctagcatca |
195 |
Q |
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| T |
13735685 |
acccttttagatacaaagtgtccccaaggtccatgtccatcgaaaactccacacaaaataatgtcttcttggcatccaaattcctagcatca |
13735776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 13736623 - 13736702
Alignment:
| Q |
374 |
acaactccagaggaactcaataacaattcattctttcttgcttcctttgccaattcttccacagctttccttgcatcatc |
453 |
Q |
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| T |
13736623 |
acaattccagatgaactcaacaacatttcattcttctttgcttcctttgccattgcttccacaactttccttgcatcatc |
13736702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 46258018 - 46258100
Alignment:
| Q |
107 |
cttttggctacaaaatgtccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattccta |
189 |
Q |
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| T |
46258018 |
cttttggctacaaagtgaccccatggcccatgtccatcaaatataccgcaaaatatcatgtcctcttggcatccaaattccta |
46258100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 37242156 - 37242092
Alignment:
| Q |
125 |
ccccaaggaccatgcccatcaaaaactccacaaaacatcatgtcttgttggcatccaaattccta |
189 |
Q |
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|||||||| ||||| |||||||||| ||||| || |||||||| | |||||||||||||||||| |
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| T |
37242156 |
ccccaaggtccatgtccatcaaaaatcccacagaagatcatgtcctcttggcatccaaattccta |
37242092 |
T |
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