View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_11 (Length: 464)
Name: NF11626_low_11
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 45347782 - 45347345
Alignment:
| Q |
20 |
ctatctccccctccgttatgtgtcgaacctaccatatatctctctccctctcccttaagttaannnnnnnnnnnnnnnnn-acactgcaaaaaatagaaa |
118 |
Q |
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| T |
45347782 |
ctatctccccctccgttatgtgtcgaacctaccatatatctctctccctctcccttaagttaattttttctttttccttttacactgcaaaaaatagaaa |
45347683 |
T |
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| Q |
119 |
caagtcaaaatgattcatgattaactaccatcaaataataatccaaaattggaaaatgaaacaata---ttgaacaatgagcccaccagaattcggttat |
215 |
Q |
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| T |
45347682 |
caagtcagaatgattcatgattaactaccatcaaataataattaaaaattggaaaatgaaacaataatattgaacaatgagcccaccagagttcggttat |
45347583 |
T |
|
| Q |
216 |
ttcaggtggttgttatagaaagttgacaggtaaatatttgaatcctcgggttgggagggagagattatgtgtaagttgtgaggcacacaggaaggaagga |
315 |
Q |
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| T |
45347582 |
ttcaggtggttgttatagaaagttgacagttaaatatttgaatcctcgggttgggggggagagattatgtgtaagttgtgaggcacacaggaaggaagga |
45347483 |
T |
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| Q |
316 |
aggaagagtcaaattgagataggttgacaagcaaaggttttatttgtagtgttaaaactaacaaggaaaatgaatgagaggtaatggcttcacaattgca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45347482 |
aggaagagtcaaattgagataggttgacaagcaaaggttttatttgtagcgttaaaactaacaaggaaaatgaatgagaggtaatggcttcacaattgca |
45347383 |
T |
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| Q |
416 |
tggtaccatcaacgtgttcgaccctcttttcatctctc |
453 |
Q |
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| T |
45347382 |
tggtaccatcaacgtgttcgaccctcttttcatctctc |
45347345 |
T |
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