View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_12 (Length: 440)
Name: NF11626_low_12
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 50554392 - 50554847
Alignment:
| Q |
1 |
agtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaagaaggtatttccgtc |
100 |
Q |
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| T |
50554392 |
agtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaagaaggtatttccgtc |
50554491 |
T |
|
| Q |
101 |
taactt----------------cttattatatgtggttttcaaattatgatataataatgattcatgacatggtttcaggaaggattctaattgcgagtc |
184 |
Q |
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| T |
50554492 |
taactttaaatacaacacttttcttattatatttggttttcaaattatgatataataatgattcatgacatggtttcaggaaggattctaattgcgagtc |
50554591 |
T |
|
| Q |
185 |
agccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttttgtg--------- |
275 |
Q |
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| T |
50554592 |
agccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttttgtgagatgtata |
50554691 |
T |
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| Q |
276 |
----------agcataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacag |
365 |
Q |
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| T |
50554692 |
acagctaaacagcataagtagtcatcattttcttcccatttgaattttgatctctcaggttgaaaaactgaaactggaaaatgcaacactatataaacag |
50554791 |
T |
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| Q |
366 |
tttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
421 |
Q |
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| T |
50554792 |
tttactgataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
50554847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 278 - 421
Target Start/End: Original strand, 50817326 - 50817469
Alignment:
| Q |
278 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
377 |
Q |
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| T |
50817326 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50817425 |
T |
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| Q |
378 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
421 |
Q |
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| T |
50817426 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaa |
50817469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 278 - 421
Target Start/End: Complemental strand, 50858538 - 50858395
Alignment:
| Q |
278 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
377 |
Q |
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| T |
50858538 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50858439 |
T |
|
| Q |
378 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
421 |
Q |
| |
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| T |
50858438 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaa |
50858395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 50816972 - 50817093
Alignment:
| Q |
139 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
238 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
50816972 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50817071 |
T |
|
| Q |
239 |
ggtaactagtcaatgttttgga |
260 |
Q |
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|||||||| ||||||||||||| |
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| T |
50817072 |
ggtaactaatcaatgttttgga |
50817093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 50858892 - 50858771
Alignment:
| Q |
139 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
238 |
Q |
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|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
50858892 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50858793 |
T |
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| Q |
239 |
ggtaactagtcaatgttttgga |
260 |
Q |
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|||||||| ||||||||||||| |
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| T |
50858792 |
ggtaactaatcaatgttttgga |
50858771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 1131584 - 1131520
Alignment:
| Q |
13 |
gatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaa |
77 |
Q |
| |
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|||||||| ||||||||| ||||| |||||||||||||||||| |||||| || ||||||||||| |
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| T |
1131584 |
gatccatctgatgaagatgatgaagcaggtccttgtgaacaaagtacaaaccctgttgatatgaa |
1131520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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