View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_15 (Length: 431)
Name: NF11626_low_15
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 49 - 424
Target Start/End: Complemental strand, 32680435 - 32680060
Alignment:
| Q |
49 |
aaactaatattttccttatcaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgagctttctt |
148 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32680435 |
aaactaatattttccttataaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgtgctttctt |
32680336 |
T |
|
| Q |
149 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccgaacaaggtgaaaattgaaaactaatttgtctgtc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32680335 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattactgaacaaggtgaaaattgaaaactaatttgtctgtc |
32680236 |
T |
|
| Q |
249 |
tttgtagtgctttggtttacattgtcagatactccctctgatccttttaataagagacaaatgagtcaatcagagttttcctcgatccacgattgacaac |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680235 |
tttgtagtgctttggtttacattgtcagatactccctctaatccttttaataggagacaaatgagtcaatcagagttttcctcgatccacgattgacaac |
32680136 |
T |
|
| Q |
349 |
ataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctctgctt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32680135 |
ataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagccctctgtgctt |
32680060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 40117110 - 40116880
Alignment:
| Q |
49 |
aaactaatattttccttatcaaatgtaatctcagtcttctgatgcctcccccagttaccctacttccgttgaatttcaacaaccttcgttgagctttctt |
148 |
Q |
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||||||||||||| ||| | ||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| ||| |
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| T |
40117110 |
aaactaatatttttcttgtaaaatgatatctcagtcttccgatgcctcctccagttaccctacttctgttgaatttcaacaaccttcattgagcttgctt |
40117011 |
T |
|
| Q |
149 |
aattctctactcagttcagcgacaactgcacttgaaagggcagctgaagagaaatccttattaccgaacaaggtgaaaattgaaaactaatttgtctgtc |
248 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
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| T |
40117010 |
aattctttactcagttcagctacaactgcactggaaagagcagccgaggagaaatccttattactgaacaaggtgaaaattgaaaactgatttgttcgtc |
40116911 |
T |
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| Q |
249 |
tttgtagtgctttggtttacattgtcagata |
279 |
Q |
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||| |||||||||||||||||||||| |||| |
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| T |
40116910 |
tttctagtgctttggtttacattgtctgata |
40116880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 44806374 - 44806454
Alignment:
| Q |
333 |
atccacgattgacaacataggttttgaaagcttctcaatcaagggaatttataccaaaatattaagactttttattgtagc |
413 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||| ||||||| |
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| T |
44806374 |
atccactattgacaacataggttttgaaagcttctgaattaagggaatttatacgaaatcattaagacttttccttgtagc |
44806454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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