View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_2 (Length: 845)
Name: NF11626_low_2
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_2 |
 | |
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| [»] scaffold0219 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 44724426 - 44724079
Alignment:
| Q |
16 |
atgaagttaactataaaaggtaacctcaatcnnnnnnnnnnacaaggatcttaatccttttctaaaatgtcaatattagtagtttatcaatatatatata |
115 |
Q |
| |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44724426 |
atgaagttaactattaaaggtaacctcaatcttttttttt-acaaggatcttaatccttttctaaaatgttaatattagtagtttatcaatatataa--- |
44724331 |
T |
|
| Q |
116 |
gctataaaaatattcgtcaataaaagatgggttggtaaggatctgcctcactcacaactttattagtgttggttcatgaaacccaactttattattttag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44724330 |
-ctataaaaatattcgtcaataaaagatgggttggtaaggatctgcctcactcacaactttattagtgttggttcatgaaacccaactttattattttag |
44724232 |
T |
|
| Q |
216 |
cggcttatttaagtgttgtctctttagttataattggaggctttttggattccaaacatgaattaaaatcctatcaatttctaaaaagaaatagaaagat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44724231 |
cggcttatttaagtgttgtctctttagttataattggaggctttttggattccaaacatgaattaaaatcctatcaatttctaaaaagaaatagaaagat |
44724132 |
T |
|
| Q |
316 |
cgaattataagagaaatagacaaaagtaaaatttttagaagatctactctttt |
368 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
44724131 |
cgaattataagagaaatagacaaaagtaaaaattttagaagatctactttttt |
44724079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 375 - 842
Target Start/End: Complemental strand, 44724041 - 44723567
Alignment:
| Q |
375 |
acatgtatctatttctctcgtaaactcagtgtttcatttctttgagaaatagaggaaatatgacaatccaaatatgcctctatgactaaattacgagggt |
474 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44724041 |
acatgtatctatttctctcataaactcagtgtttcatttctttgagaaatagaggaaatatgacaatccaaatatgcatctatgactaaattacgagggt |
44723942 |
T |
|
| Q |
475 |
ttatataaatatgcaatatttattgggnnnnnnnnnntcaatactcttgaaagtgattaattttttaaaataagtannnnnnnn-cttcttaaaaaacta |
573 |
Q |
| |
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|||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44723941 |
ttatataaatatgcaatacttattgaaaagaaaaaatgcaatattcttaaaagtgattaattttttaaaataagtattttttcttcttcttaaaaaacta |
44723842 |
T |
|
| Q |
574 |
taataaacgggct-------catgaacaactcttttggagtctagctcaaagtccaccggtcgaaaattgctcttcttcctttttgtttttgctcactca |
666 |
Q |
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||| ||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44723841 |
taacaaacgagctttaagtacatgaacaatttttttggagtctagctcaaagtccaccggtcgaaaattgctcttctttctttttgtttttgctcactca |
44723742 |
T |
|
| Q |
667 |
cgtaggcacgtgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaag |
766 |
Q |
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||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
44723741 |
cgtgcctacgtgagttaacttacgctgcaaaatgcttggcctgagttaactcaagttgaaatagtcgagcatgagttaacttatgttagatataattaag |
44723642 |
T |
|
| Q |
767 |
ggaatgaacaattttaaactagagatgagcaaatttcccaccgatctcaactataaatcatgcatccaattgatgg |
842 |
Q |
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||||| ||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
44723641 |
ggaat-aacaattttgaacgagagatgaacaaatttcccaccgatctcaagtataaatcatgcacccaattgatgg |
44723567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 712 - 784
Target Start/End: Original strand, 4091448 - 4091520
Alignment:
| Q |
712 |
ttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaagggaatgaacaattttaaa |
784 |
Q |
| |
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|||||||| ||||||| ||||||| ||||||||||| || | | | || ||||||||||||||||||||||| |
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| T |
4091448 |
ttaactcacgttgaaaaagtcgagtatgagttaactcacatcgaacatttttaagggaatgaacaattttaaa |
4091520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 649 - 784
Target Start/End: Complemental strand, 38276475 - 38276340
Alignment:
| Q |
649 |
tttgtttttgctcactcacgtaggcacgtgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaatagtcgagcatgagttaactt |
748 |
Q |
| |
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|||||||||||||| |||||| || ||||| |||||| |||| |||||| ||||| |||||||||||| ||||||| ||||| |||||||||| |
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| T |
38276475 |
tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaaagaccgagcgtgagttaactc |
38276376 |
T |
|
| Q |
749 |
acgttggatataattaagggaatgaacaattttaaa |
784 |
Q |
| |
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| || ||| |||||||||||||||| |||||||||| |
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| T |
38276375 |
atgtaggacataattaagggaatgagcaattttaaa |
38276340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 747
Target Start/End: Original strand, 32049048 - 32049165
Alignment:
| Q |
629 |
gaaaattgctcttcttcctttttgtttttgctcactcacgtaggcacgtgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaat |
728 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||| |||||| | || | |||||||||| ||||||| |
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| T |
32049048 |
gaaaattgctctt-ttcctttttgtttttgcttattcacgtgtctacgtgagttaactcacgctgaaaaatgtccagcgtaagttaactcacgttgaaaa |
32049146 |
T |
|
| Q |
729 |
agtcgagcatgagttaact |
747 |
Q |
| |
|
|| | |||||||||||||| |
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| T |
32049147 |
agccaagcatgagttaact |
32049165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 677 - 781
Target Start/End: Complemental strand, 13428 - 13324
Alignment:
| Q |
677 |
tgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaagggaatgaaca |
776 |
Q |
| |
|
|||||||||||| |||| |||||| || || |||| ||||||| ||| ||| |||||||| |||||||||| | ||| || |||| |||||||||||||| |
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|
| T |
13428 |
tgagttaactcatgctgaaaaatgttcagcgtgagctaactcacgttaaaaaagtcgagcgtgagttaactcatgttagacataaataagggaatgaaca |
13329 |
T |
|
| Q |
777 |
atttt |
781 |
Q |
| |
|
||||| |
|
|
| T |
13328 |
atttt |
13324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 798
Target Start/End: Complemental strand, 26219919 - 26219766
Alignment:
| Q |
646 |
ctttttgtttttgctcactcacgtaggcacgtgagttaactcacgctgcaaaa--tgctcggcctgagttaactcaagttgaaatagtcgagcatgagtt |
743 |
Q |
| |
|
||||||||||||||||| ||| || || |||||||||||| |||| |||| || || | |||||||| ||| ||| ||| |||||||| |||||| |
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| T |
26219919 |
ctttttgtttttgctcattcatgtgcctacttgagttaactcatgctgaaaaaaatgttcatcgtgagttaattcacgttaaaaaagtcgagcgtgagtt |
26219820 |
T |
|
| Q |
744 |
aacttacgttggatataattaagggaatgaacaattttaaactagagatgagcaa |
798 |
Q |
| |
|
|||| | || | | ||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
26219819 |
aactcatgtag-agataattaagggaatgaacaattttaaaagagagaagagcaa |
26219766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 674 - 781
Target Start/End: Complemental strand, 5953401 - 5953294
Alignment:
| Q |
674 |
acgtgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaagggaatga |
773 |
Q |
| |
|
||||||||||||||| || |||||| | || |||||||||||||||||||| | ||||| |||||||||| ||||| || |||| |||||||||| |
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| T |
5953401 |
acgtgagttaactcatattgaaaaatgtccagcttgagttaactcaagttgaaaaggccgagcctgagttaactaacgttagacataaataagggaatgc |
5953302 |
T |
|
| Q |
774 |
acaatttt |
781 |
Q |
| |
|
||||||| |
|
|
| T |
5953301 |
tcaatttt |
5953294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 727
Target Start/End: Complemental strand, 1031209 - 1031159
Alignment:
| Q |
677 |
tgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaa |
727 |
Q |
| |
|
||||||||||||||||| |||||| || || |||||||||||||||||||| |
|
|
| T |
1031209 |
tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaaa |
1031159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 780
Target Start/End: Original strand, 42282469 - 42282538
Alignment:
| Q |
711 |
gttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaagggaatgaacaattt |
780 |
Q |
| |
|
||||||||| ||||||| | |||| | |||||||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
42282469 |
gttaactcatgttgaaaaaatcgaacgtgagttaactcacgttgggcataattaagggaatgagcaattt |
42282538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 727
Target Start/End: Complemental strand, 22047 - 21997
Alignment:
| Q |
677 |
tgagttaactcacgctgcaaaatgctcggcctgagttaactcaagttgaaa |
727 |
Q |
| |
|
||||||||||||||||| |||||| || || |||||||||||||||||||| |
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|
| T |
22047 |
tgagttaactcacgctgaaaaatgttcagcgtgagttaactcaagttgaaa |
21997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 699
Target Start/End: Original strand, 20844738 - 20844807
Alignment:
| Q |
629 |
gaaaattgctcttcttcctttttgtttttgctcactcacgtaggcacgtgagttaactcacgctgcaaaat |
699 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||| ||||| |
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|
| T |
20844738 |
gaaaattgctcttctccctttt-gtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat |
20844807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 708 - 784
Target Start/End: Original strand, 48693190 - 48693266
Alignment:
| Q |
708 |
tgagttaactcaagttgaaatagtcgagcatgagttaacttacgttggatataattaagggaatgaacaattttaaa |
784 |
Q |
| |
|
|||||||||||| ||||||| | | ||| |||||||||| ||| |||| |||||||||||||||| ||||||||| |
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|
| T |
48693190 |
tgagttaactcacgttgaaaaaaccaagcgtgagttaactcacgctggacataattaagggaatgagtaattttaaa |
48693266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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