View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_low_21 (Length: 343)
Name: NF11626_low_21
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 41236981 - 41237309
Alignment:
| Q |
1 |
tatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagttagtttatacggtttgactcaaaataaactactccatcgtatcgttttaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41236981 |
tatgcccatagcaccacgatagtaagctgaagtaggaaaagaaagttagtttatacggtttgactcaaaataaactactccatcgtat---tttaaggtt |
41237077 |
T |
|
| Q |
101 |
atatacatatc-gagaaaactaaataattgtgtttctttcggtagaattatctgtcttttccgtataaata---cttaaa-gagtattattaacaaaaga |
195 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
41237078 |
atatacatatctgagaaaactaaataattgtgtttctttcggtagaattatctgtcttttccgtataaataatacttaaaagagtattattaacaaaaga |
41237177 |
T |
|
| Q |
196 |
ataacacaaaactgacaagtaaaagtcacagagggagtactagaaaaccactctcctttaaaaatcttaccggttgtaattgttcggaaccgctcctgac |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41237178 |
ataacacaaaactgacaagtaaaagtcacag--ggagtactagaaaaccactctcctttaaaaatcttaccggttgtaattgttcggaaccgctcctgac |
41237275 |
T |
|
| Q |
296 |
ctgcagtatcccaaacttggagcatgatcttttt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41237276 |
ctgcagtatcccaaacttggagcatgatcttttt |
41237309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 23385393 - 23385449
Alignment:
| Q |
268 |
gttgtaattgttcggaaccgctcctgacctgcagtatcccaaacttggagcatgatc |
324 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
23385393 |
gttgtaattgtccggaaccgttcctgtcctgcagtatcccaaatttggagcttgatc |
23385449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University