View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_low_24 (Length: 310)
Name: NF11626_low_24
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_24 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0204 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 41413953 - 41414254
Alignment:
| Q |
8 |
gagcagagaagagcaagaaatacttgagcaattatgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41413953 |
gagcagagaagagcaagaaatacttgagcaattatgaaagtgaaaaaaaggtttacaaatactgtgatactttgccctgctgaacggatttctaatggaa |
41414052 |
T |
|
| Q |
108 |
atatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagccttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41414053 |
atatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagccttt |
41414152 |
T |
|
| Q |
208 |
ggatagttcctggttatccccaaacttgactccaagaattattgcaactataacctgctcatgcgaaaaatgaaacaaaataagttgccctaaatttttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41414153 |
ggatagttcctggttatccccaaacttgactccaagaattattgcaactataacctgctcatgc-aaaaatgaaacaaaataagttgccctaaatttttg |
41414251 |
T |
|
| Q |
308 |
ttc |
310 |
Q |
| |
|
||| |
|
|
| T |
41414252 |
ttc |
41414254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 36293480 - 36293783
Alignment:
| Q |
8 |
gagcagagaagagcaagaaatacttgagcaattatgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaa |
107 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
36293480 |
gagcagagaagagcaaggaatgcctgagcaattacgaaagtgaaaaaaaggtttacagatactgtgatactctgccctgctgaacggatttctaatggaa |
36293579 |
T |
|
| Q |
108 |
atatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagccttt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36293580 |
atatctcacttggaactgtccaaccaagtgggccccacgaccatccaaatgctacaacaaataggcaaaccacaactacaaccaatattgaatagccttt |
36293679 |
T |
|
| Q |
208 |
ggatagttcctggttatccccaaacttgactccaagaattattgcaactataacctgctcatgcgaaaaatgaaacaaaataagttgccct-aaattttt |
306 |
Q |
| |
|
|| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36293680 |
cgacagttcttggttatccccaaacttcaccccaagaattattgcaactataacctgctcatgtgaaaaatgaaacaaaataagttgccctgcaattttt |
36293779 |
T |
|
| Q |
307 |
gttc |
310 |
Q |
| |
|
|||| |
|
|
| T |
36293780 |
gttc |
36293783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 48345500 - 48345262
Alignment:
| Q |
41 |
atgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggac |
140 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||| ||||| || | |
|
|
| T |
48345500 |
atgaaagtgaacagaaggtttactgcaactgtgatactttgccctgccgatcggatttctaatggaaatatctcacttgggactgtccatccaagtggcc |
48345401 |
T |
|
| Q |
141 |
cccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagcctttggatagttcctggttatccccaaacttgactcc |
240 |
Q |
| |
|
||||||||||||| || |||| ||||||||| ||| |||||||||||| ||||||||||| ||| || | ||| ||||| |||| |||||| || |
|
|
| T |
48345400 |
cccatgaccatccaaaagctagaacaaatagagaaagtacaactacaaccgatattgaatagttttttgacaattcttggtttggtccaagcttgacacc |
48345301 |
T |
|
| Q |
241 |
aagaattattgcaactataacctgctcatgcgaaaaatg |
279 |
Q |
| |
|
| |||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
48345300 |
caaaattatggcaactataacctgttcatgtgaaaaatg |
48345262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 48332911 - 48332666
Alignment:
| Q |
35 |
gcaattatgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaaatatctcacttggaattgtccaaccaa |
134 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| |||||||||||||| || ||||||||||| ||||||||||||||||| | |||||| || | |
|
|
| T |
48332911 |
gcaattatgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatccta |
48332812 |
T |
|
| Q |
135 |
gaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagcctttggatagttcctggttatccccaaactt |
234 |
Q |
| |
|
| || |||||||||||||| || |||| ||||||||| | | | | ||||||| |||||||||||| ||| || | ||| ||||| || ||||| || |
|
|
| T |
48332811 |
gtggcccccatgaccatccaaatgctagaacaaatagagagagtattattacaaccgatattgaatagctttttgacaattcttggttttctccaaattt |
48332712 |
T |
|
| Q |
235 |
gactccaagaattattgcaactataacctgctcatgcgaaaaatga |
280 |
Q |
| |
|
|| || |||||||| ||| || |||||| ||||| ||||||||| |
|
|
| T |
48332711 |
gatccccagaattatggcagctgaaacctgttcatgtgaaaaatga |
48332666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 278
Target Start/End: Complemental strand, 8280 - 8040
Alignment:
| Q |
38 |
attatgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaaatatctcacttggaattgtccaaccaagag |
137 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||||||| | |||||| || || | |
|
|
| T |
8280 |
attatgaaagtgaaaagaaggtttacagcaactgttatactctgccctgctgatcggatttctaatggaaatatctcacttgggactgtccaccctagtg |
8181 |
T |
|
| Q |
138 |
gaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagcctttggatagttcctggttatccccaaacttga- |
236 |
Q |
| |
|
| |||||||||||||| || |||| ||||||||| |||| ||||||| || | | |||||||||||| || | ||| ||||| || |||||||||| |
|
|
| T |
8180 |
gcccccatgaccatccaaatgctagaacaaatagacaaattgcaactactactgacaatgaatagccttttgacaattcttggttgtctccaaacttgat |
8081 |
T |
|
| Q |
237 |
ctccaagaattattgcaactataacctgctcatgcgaaaaat |
278 |
Q |
| |
|
| ||||| ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
8080 |
ccccaag-attatggcaactatgacctgctcatgtgaaaaat |
8040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 280
Target Start/End: Complemental strand, 20433 - 20188
Alignment:
| Q |
35 |
gcaattatgaaagtgaagaaaaggtttacaaatactgtgatactttgccctgcagaacggatttctaatggaaatatctcacttggaattgtccaaccaa |
134 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| |||||||||||||| || ||||||||||| ||||||||||||||||| | |||||| || | |
|
|
| T |
20433 |
gcaattatgaaagtgaagagaaggttcacagcaactgttatactttgccctgccgatcggatttctaacggaaatatctcacttgggactgtccatccta |
20334 |
T |
|
| Q |
135 |
gaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagcctttggatagttcctggttatccccaaactt |
234 |
Q |
| |
|
| || |||||||||||||| || |||| ||||||||| | | | | ||||||| |||||||||||| ||| || | ||| ||||| || ||||| || |
|
|
| T |
20333 |
gtggcccccatgaccatccaaatgctagaacaaatagagagagtattattacaaccgatattgaatagctttttgacaattcttggttttctccaaattt |
20234 |
T |
|
| Q |
235 |
gactccaagaattattgcaactataacctgctcatgcgaaaaatga |
280 |
Q |
| |
|
|| || |||||||| ||| || |||||| ||||| ||||||||| |
|
|
| T |
20233 |
gatccccagaattatggcagctgaaacctgttcatgtgaaaaatga |
20188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 47212703 - 47212628
Alignment:
| Q |
76 |
actttgccctgcagaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggaccccatgaccat |
151 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
47212703 |
actttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccat |
47212628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 47186047 - 47185943
Alignment:
| Q |
104 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
203 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
|
|
| T |
47186047 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
47185948 |
T |
|
| Q |
204 |
ctttg |
208 |
Q |
| |
|
||||| |
|
|
| T |
47185947 |
ctttg |
47185943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 47198586 - 47198482
Alignment:
| Q |
104 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
203 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
|
|
| T |
47198586 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
47198487 |
T |
|
| Q |
204 |
ctttg |
208 |
Q |
| |
|
||||| |
|
|
| T |
47198486 |
ctttg |
47198482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University