View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_3 (Length: 716)
Name: NF11626_low_3
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 663; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 18 - 712
Target Start/End: Complemental strand, 39127750 - 39127056
Alignment:
| Q |
18 |
atataccagcacagtactggattcacatttactagctcgcagggcaaaagctctagctggtttgtcttcattaagtactggtctttcctgtgttttgagt |
117 |
Q |
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| T |
39127750 |
atataccagcacagtactggattcacatttactagctcgcagggcaaaagctctagctggtttgtcttcattaagtactggtctttcctgtgttgtgagt |
39127651 |
T |
|
| Q |
118 |
tatatcttcaatcttgggcgagctgaacgtgtacgagctgcaattccactgacatgaggacatgtcattgaggtgtctaacatgatagagaagtcagtct |
217 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39127650 |
tatatcttcaatcttgggcgagctgaacgggtaccggctgcaattccactgacatgaggacatgtcattgaggtgtcaaacatgatagagaagtcagtct |
39127551 |
T |
|
| Q |
218 |
tctggtgttctctggaaggcttatcggaccaaggttctgaggccatgcagcaataatgttgactgtggagctataaaatttggtttaaggattgaatggt |
317 |
Q |
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| T |
39127550 |
tctggtgttctctggaaggcttatcggaccaaggttctgaggccatgcagcaataatgttgactgtggagctataaaatttggtttaaggattgaatggt |
39127451 |
T |
|
| Q |
318 |
ttgtaaacttttccctctaactgagaatcttgctaatgctggtgctatagacttccctattattgtttctccaaattcaatctgagaaagtggccgtgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127450 |
ttgtaaacttttccctctaactgagaatcttgctaatgctggtgctatagacttccctattattgtttctccaaattcaatctgagaaagtggccgtgtt |
39127351 |
T |
|
| Q |
418 |
gtggagtttatgtaagatttcaaggggattgattcatcaaatcctactaatgttgcaggcaagacatgaacatcaattgaatcttcttccaagttaagct |
517 |
Q |
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| T |
39127350 |
gtggagtttatgtaagatttcaaggggattgattcatcaaatcctactaatgttgcaggcaagacatgaacatcaattgaatcttcttccaagttaagct |
39127251 |
T |
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| Q |
518 |
ctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctgatcttccattgacacctcaatcgcatatgaccgttttgcc |
617 |
Q |
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| T |
39127250 |
ctgtgtttgccaagatcatagcagtactacttgcttcattcacaacttgacccttttctgatcttccattgacacctcaatcgcatatgaccgttttgcc |
39127151 |
T |
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| Q |
618 |
ttgaaatttgacctttggaagagagtattgacgcaaattgtctctcactatctccaccacttaggtaaaccggctcaagttctttgcctttgctt |
712 |
Q |
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| T |
39127150 |
ttgaaatttgacctttggaagagagtattgaggcaaattgactctcactatctccaccacttaggtaaaccggctcaagttctttgccattgctt |
39127056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 152 - 704
Target Start/End: Original strand, 39479806 - 39480363
Alignment:
| Q |
152 |
gagctgcaattccactgacatgaggacatgtcattgaggtgtctaacatgatagagaagtc-agtcttctggtgttctctggaaggcttatcggaccaag |
250 |
Q |
| |
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||||||| || || || ||||||||||||| ||||||||| || |||||| |||||||| | |||||| |||| ||||| |||| | |||||||| |
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| T |
39479806 |
gagctgcgataccgctaacatgaggacatgacattgaggtacctgacatgacagagaagtttactcttctagtgtcatctggtaggccagtaggaccaag |
39479905 |
T |
|
| Q |
251 |
gttctgaggccatgcagcaataatgttgactg-tggagctataaaatttggtttaaggattgaatggtttgt-aaacttttccctctaactgagaatctt |
348 |
Q |
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| T |
39479906 |
gttctgaggccatgcagcaatgatgttgactcctggagctataacatctggtttaaggattgaagggtttgtgaaacttggtcctctagctgagaatact |
39480005 |
T |
|
| Q |
349 |
gctaatgctggtgctatagacttccctattattgtttctccaaattcaatctgagaaagtggccgtgttgtggagtttatgtaagatttcaaggggattg |
448 |
Q |
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|||| |||||||||| |||||||||| ||| ||| |||||||||||||| || |||||||| |||||||||||||||||||| |||||||| || || |
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| T |
39480006 |
gctactgctggtgctctagacttcccagttacagttcctccaaattcaatcctagcaagtggccttgttgtggagtttatgtaagttttcaaggtgactg |
39480105 |
T |
|
| Q |
449 |
attcatcaaatcctactaatgttgcaggcaagacatgaacatcaattgaatcttcttccaagttaagctctgtgtttgccaagatcatagcagtactact |
548 |
Q |
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|||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
39480106 |
attcatcaaatcctaccaatgttgcaggtaagagatgaacatcaaccgaatcttcttccaagtttagctctgtgtttgccaagatcatagcagcaccacc |
39480205 |
T |
|
| Q |
549 |
tgcttcattcacaacttgacccttttctgatcttccattgacacctcaatcgcatatgaccgttttgccttgaaatttgacctttggaagaga-gtattg |
647 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||| |||||||||| ||| |||| ||| |||| ||||||| |||| ||||||||||||| ||| |
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| T |
39480206 |
tgcttccttcacagcttgacccttttctgatcttccgttgacacctcgatcacataccaccatttttccttgaactttgtcctttggaagagaccctttg |
39480305 |
T |
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| Q |
648 |
acgc-aaattgtctctcactatctccaccacttaggtaaaccggctcaagttctttgc |
704 |
Q |
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| || |||||| ||||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
39480306 |
aggcaaaattgactctcactatccccaccagagaggtaaaccagctcaagttctttgc |
39480363 |
T |
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