View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_30 (Length: 252)
Name: NF11626_low_30
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_30 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 2096315 - 2096079
Alignment:
| Q |
23 |
atgtatcatcaagttgtgcattgcattttcagagacgacaacaacaatcaagttttatctcgctaagtagaatcggctacaaataatacattgttctata |
122 |
Q |
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| T |
2096315 |
atgtatcatcaagtgttgcattgcatttttagagacgacaacaacaattaagttttatctccctaagtagaatcggctacaaataatacattgttctata |
2096216 |
T |
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| Q |
123 |
aataaatnnnnnnnntagcagaagaataaag---------gaagaagaaaattcacctctcgctctctatgatttttcaactccgagtctagctctaatg |
213 |
Q |
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| T |
2096215 |
aataaat-aaaaaaatagcagaagaataaaggaagaagaagaagaagaaaattcacctctcgctctctatgatttttcaactccaagtctagctctaatg |
2096117 |
T |
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| Q |
214 |
tgtttgttaagagtccacagcagtagtagtagtataaat |
252 |
Q |
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| T |
2096116 |
tgtttgtt-agagtccgcagtagtagtagtagtataaat |
2096079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 2104969 - 2104913
Alignment:
| Q |
176 |
ctctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacag |
233 |
Q |
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| T |
2104969 |
ctctctatgatttttcaactccaattccaggtctaatgtgtttgtt-agagtccacag |
2104913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 45317627 - 45317584
Alignment:
| Q |
60 |
acaacaacaatcaagttttatctcgctaagtagaatcggctaca |
103 |
Q |
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| T |
45317627 |
acaacaacaatcaagttttatctcactaattagagtcggctaca |
45317584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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