View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_31 (Length: 252)
Name: NF11626_low_31
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 7024909 - 7024723
Alignment:
| Q |
1 |
ttttagtccttcgaaatatcatttttggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcag |
100 |
Q |
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| T |
7024909 |
ttttagtcgttcgaaatatcatttttggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagccaactacgccagtcag |
7024810 |
T |
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| Q |
101 |
agagcatatgaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaaccttggtccc |
187 |
Q |
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| T |
7024809 |
agagcatatgaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaaccttggtccc |
7024723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 7074094 - 7074226
Alignment:
| Q |
46 |
atttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcagagagcatatgaaaaagctactgaatcttggaggtagaaatcattt |
145 |
Q |
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| T |
7074094 |
atttctaaatatgtatcaactttggtctttatttatagcaaactacgccagtcagagagcatataaaaatgctattgaattttggtggtagaaataattg |
7074193 |
T |
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| Q |
146 |
ctttcaaccattcaaccacatttaacttacaac |
178 |
Q |
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| T |
7074194 |
ctttcaacccttcaagcacatttaacttccaac |
7074226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 7037938 - 7037787
Alignment:
| Q |
27 |
ggtctcatattggtcctttatttctaaatatgagtcaactttagtctttgtttatagcgaactacgccagtcagagagcatatgaaaaagctactgaatc |
126 |
Q |
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| T |
7037938 |
ggtcttatattgatccttcatttctaaatacgtgtcacctttgatctttatttgtagcgaactacacgagtcagagagcatataaagaaactcttgaatt |
7037839 |
T |
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| Q |
127 |
ttggaggtagaaatcatttctttcaaccattcaaccacatttaacttacaac |
178 |
Q |
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| T |
7037838 |
ttgggagtaggaataattgctttcaactattgaagcacatttaacttgcaac |
7037787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 7024705 - 7024666
Alignment:
| Q |
203 |
cttgcaactaaaatttaatagcatttacacaggctctctg |
242 |
Q |
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| T |
7024705 |
cttgcaactaaaatttaatagcttttacacaggctctctg |
7024666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 7032171 - 7032084
Alignment:
| Q |
86 |
aactacgccagtcagagagcatatgaaaaagctactgaatcttggaggtagaaatcatttctttcaaccattcaaccacatttaactt |
173 |
Q |
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| T |
7032171 |
aactacgtgagtcagagaggatataaaaaagcaattgaattttggtgatagaaataattgctttcaatcattcaagcacatttaactt |
7032084 |
T |
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