View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_low_33 (Length: 248)
Name: NF11626_low_33
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_33 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 8113389 - 8113605
Alignment:
| Q |
43 |
tttttcctctgaaagttaa-gaatcttcattgattgagga-gagaagcgcgaaagaaaacttggaagtctcgtggtcatgtttcctaattggtagttctc |
140 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8113389 |
tttttcctctaaaagttaatgaatcttgattgatcgagaaagagaagcgcgaaagaaaacttggaagtctcgtggtcatgtttcctaattggtagttctc |
8113488 |
T |
|
| Q |
141 |
aatttcgtttctatgt---------tattattgccttttcctatcaaccattggatgtatctaatgatttgattattagattgagaggctgctgcagaga |
231 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
8113489 |
aatttcgtttctatgtatttcaacatattattgccttttcctatcaaccattggatgtatctaatggtttgattattagattaagaggctgctgcaggga |
8113588 |
T |
|
| Q |
232 |
cataagatggagaggat |
248 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8113589 |
cataagatggagaggat |
8113605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 8111979 - 8111903
Alignment:
| Q |
159 |
ttattgccttttcctatcaaccattggatgtatctaatgatttgattattagattgagaggctgctgcagagacata |
235 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | | || ||||||||| |
|
|
| T |
8111979 |
ttattgcatttccctatcaaccattggatgtatctaatggtttatttattagattgagagacagttgtagagacata |
8111903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8112659 - 8112614
Alignment:
| Q |
1 |
catcagtatcacaaaacctattatatatggggattcattaatttttt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8112659 |
catcagtatcacaaaacctattatatat-gggcttcattaatttttt |
8112614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 40502095 - 40502184
Alignment:
| Q |
159 |
ttattgccttttcctatcaaccattggatgtatctaatgatttgattattagattgagaggctgctgcagagacataagatggagaggat |
248 |
Q |
| |
|
|||||| ||||| |||| ||| ||||||||||||||||| || |||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
40502095 |
ttattgtcttttgctattaactattggatgtatctaatggttcgattattagattgagaggctgctgtagggacataagatgaagaggat |
40502184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 40499681 - 40499640
Alignment:
| Q |
207 |
ttagattgagaggctgctgcagagacataagatggagaggat |
248 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
40499681 |
ttagattgagaggctgctgtagagacataggatagagaggat |
40499640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 14006187 - 14006114
Alignment:
| Q |
159 |
ttattgccttttcctatcaaccattggatgtatctaatgatttgattattagattgagaggctgctgcagagac |
232 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||| |
|
|
| T |
14006187 |
ttattgcctttctctatcaaccatttgatgtatctaatggtttatttattagattgagaggctgctgtagagac |
14006114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 13182726 - 13182781
Alignment:
| Q |
180 |
cattggatgtatctaatgatttgattattagattgagaggctgctgcagagacata |
235 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
13182726 |
cattggatgtatctaatggtttatttattagattgagaggctgctgtagagacata |
13182781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 5416047 - 5415975
Alignment:
| Q |
159 |
ttattgccttttcctatcaaccattggatgtatctaatgatttgattattagattgagaggctgctgcagaga |
231 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |||||||||| || | | | |||||||||||||| ||||||||| |
|
|
| T |
5416047 |
ttattgtctttccctatcatccattggaggtatctaatggttggttcaatagattgagaggctactgcagaga |
5415975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University