View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11626_low_4 (Length: 663)
Name: NF11626_low_4
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 6 - 644
Target Start/End: Original strand, 37753684 - 37754322
Alignment:
| Q |
6 |
agcagcacagaggttcgtgagagatccagtgacatctatatacgttggatagtggcagtacggtgttttggtttcttccatgacatgacaagaggggtgt |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37753684 |
agcagcactgaggttcgtgagagatccagtgacatctatatacgttggatagtggcagtacggtgttttggtttcttccatgacatgacaagaggggtgt |
37753783 |
T |
|
| Q |
106 |
cctgaaatgttttgaaacttcgatcacagcatgaatgtaatgtgaatagaatcaaaacttggcataaagcagttgagtgactctccatactgtataagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37753784 |
cctgaaatgttttgaaacttcgatcacagcatgaatgtaatgtgaatagaatcaaaacttggcataaagcagttgagtgattctccatactgtataagaa |
37753883 |
T |
|
| Q |
206 |
attgacacttaggaagtaggaactcctagctcctaagcatacaacatcctttattatttagtcttattacgtaattcctcctacaataagtgtgtttatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37753884 |
attgacacttaggaagtaggaactcctagctcctaagcatacaacatcctttattatttagtcttattacgtaattcctcctacaataagtgtgtttatt |
37753983 |
T |
|
| Q |
306 |
agtag-aaaaaataaaataatgttttatcttgaaaatgattgtattgtaactaacggttgttgtttggactcatgaattactttg-aggctttaaccata |
403 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||| ||||||| |
|
|
| T |
37753984 |
agtagaaaaaaataaaataacgttttatcttgaaaatgattgtattgtaaccaacggttgttgtttggacacatgaattaccttgaaggcttgaaccata |
37754083 |
T |
|
| Q |
404 |
aataaaattagactgaccaagtacannnnnnnattaacaattaatgtttttctaaattaaattttcacacagtagcaaatcaaaaattgaaagataaata |
503 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37754084 |
aataaaattagtctgaccaagtacattttttta-taacaattaatgtttttctaaattaaattttcacacagtaacaaatcaaaaattgaaagataaata |
37754182 |
T |
|
| Q |
504 |
tgaaaaaagaaatcatgtagatgactatgcaagatagtgggagaatatcctaatccaagtacaaacatgaggcatttagcatttgataatcaagttaaat |
603 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37754183 |
tgacaaaagaaatcatgtagatgactatgcaagatagtggaagaatatcctaatccaagtacaaacatgaggcatttggcatttgataatcaagttaaat |
37754282 |
T |
|
| Q |
604 |
taaatatttagaaaaaatgttgagaaccaaagtgagcacgc |
644 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37754283 |
taattattta-aaaaaatgttgagaaccaaagtgagcacgc |
37754322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 37739096 - 37739050
Alignment:
| Q |
471 |
cacagtagcaaatcaaaaattgaaagataaatatgaaaaaagaaatc |
517 |
Q |
| |
|
||||||| ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
37739096 |
cacagtaacaaatttaaagttgaaagataaatatgaaaaaagaaatc |
37739050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 498 - 644
Target Start/End: Original strand, 29641165 - 29641310
Alignment:
| Q |
498 |
taaatatgaaaaaagaaatcatgtagatgactatgcaagatagtgggagaatatcctaatccaagtacaaacatgaggcatttagcatttgataatcaag |
597 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29641165 |
taaatatgaaaaaagaaatcatatagatgactatgcaagatagtgggagaatatcctaatccaagtacaaacatgaggcatttggcatttgataatcaag |
29641264 |
T |
|
| Q |
598 |
ttaaattaaatatttagaaaaaatgttgagaaccaaagtgagcacgc |
644 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29641265 |
ttaaattacttatttag-aaaaatgttgagaaccaaagtgagcacgc |
29641310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 498 - 644
Target Start/End: Complemental strand, 17098869 - 17098724
Alignment:
| Q |
498 |
taaatatgaaaaaagaaatcatgtagatgactatgcaagatagtgggagaatatcctaatccaagtacaaacatgaggcatttagcatttgataatcaag |
597 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17098869 |
taaatatgaaaaaagaaatcatatagatgactatgcaagatagtgggagaatatcctaatctaagtacaaacatgaggcatttgacatttgataatcaag |
17098770 |
T |
|
| Q |
598 |
ttaaattaaatatttagaaaaaatgttgagaaccaaagtgagcacgc |
644 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
17098769 |
ttaaattaattatttaga-aaaatgttgagaactaaagtgagtacgc |
17098724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University