View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_43 (Length: 232)
Name: NF11626_low_43
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_43 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41236739 - 41236970
Alignment:
| Q |
1 |
ttatcctaaatgtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatg |
100 |
Q |
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| T |
41236739 |
ttatcctaaatgtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatg |
41236838 |
T |
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| Q |
101 |
ctacgaatccaattcgtgatatctgaaattagcatatggttggtgaatattgcatatgagaaaaaacctttgaagaaaataatacaagatggaaaacatt |
200 |
Q |
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| T |
41236839 |
ctacgaatccaattcgtgatatctgaaattagcatatggttggtgaatattgcatatgagaaaaaacctttgaagaaaataatacaagatggaaaacatt |
41236938 |
T |
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| Q |
201 |
actgttaaatgaagattcatctgtaacatcat |
232 |
Q |
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| T |
41236939 |
actgttaaatgaagattcatctgtaacatcat |
41236970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 40197382 - 40197277
Alignment:
| Q |
17 |
catacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcg |
116 |
Q |
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| T |
40197382 |
catacccgtttgctttcatccatgtcagctttgttgcccaccaatatcttgtt---aacattgtcagaagcatgctgctcaatgttacgaatccaattcc |
40197286 |
T |
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| Q |
117 |
tgatatctg |
125 |
Q |
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| T |
40197285 |
tgatatctg |
40197277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 23384951 - 23385061
Alignment:
| Q |
12 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatcca |
111 |
Q |
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| T |
23384951 |
gtttgcatacccttttgctttcgtccatatctgctttgttccctaccagtattttgtt---aacattatccgaagcatgttgctcaatgttgcgaatcca |
23385047 |
T |
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| Q |
112 |
attcgtgatatctg |
125 |
Q |
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| T |
23385048 |
attcctgatatctg |
23385061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 29346430 - 29346532
Alignment:
| Q |
20 |
acccttttgctttcatccatgtcaactttgttgccaaccagtattttgttgacaatattgtctgaagaatgttgctcaatgctacgaatccaattcgtga |
119 |
Q |
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| T |
29346430 |
acccttttgctttcatccatgtcagccttgttccccactaatattttgttgac---attgtcagaagcatgctgctcaatgttgcgaatccaattcttga |
29346526 |
T |
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| Q |
120 |
tatctg |
125 |
Q |
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| T |
29346527 |
tgtctg |
29346532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 20686929 - 20686875
Alignment:
| Q |
12 |
gtttgcatacccttttgctttcatccatgtcaactttgttgccaaccagtatttt |
66 |
Q |
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| T |
20686929 |
gtttgcatacactttagatttcatccatatcaactttgtttccaaccagtatttt |
20686875 |
T |
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