View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_6 (Length: 586)
Name: NF11626_low_6
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 311 - 573
Target Start/End: Original strand, 18963300 - 18963562
Alignment:
| Q |
311 |
ttcttgaacatatcaagattaagtggcaatctccacatgcatcttcaaaaatccttttccattggagtaagagatattcttgaggaagttgtttattgta |
410 |
Q |
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| T |
18963300 |
ttcttgaacatatcaagattaagtggcaatctccacaggcatcttcaaaaatccttttccattggagtaagagatattcttgaggaagttgtttattgca |
18963399 |
T |
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| Q |
411 |
gggttggatagaacctcaaagtagtgttctgcttcaacgttagaggtaaaacaccagccatgttggagttcagaattaggataataagcgcataaactcc |
510 |
Q |
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| T |
18963400 |
gggttggatagaacctcaaagtagtgttctgcttcaacgttagaggtaaaacaccagccatgttgcagttcagaattaggataataagcacataaactcc |
18963499 |
T |
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| Q |
511 |
cagttcgcttcttgatgcagtcgttgtgagattgacataagttgggatgttcctcgactgcct |
573 |
Q |
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| T |
18963500 |
cggttcccttcttgatgcagtcgttgttagattgacttaagttgtaatgttcctcgactgcct |
18963562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 18963170 - 18963246
Alignment:
| Q |
236 |
cccatgcacatgctacatttattgaaattcatgaaggatatctaaaagccaactgattagttggaaagaaagatatt |
312 |
Q |
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| T |
18963170 |
cccatgcacatgctacatttattgaaattcacgaaggatatctaaaagccaactgattagttggaaagaaagatatt |
18963246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 436 - 562
Target Start/End: Complemental strand, 21354699 - 21354573
Alignment:
| Q |
436 |
gttctgcttcaacgttagaggtaaaacaccagccatgttggagttcagaattaggataataagcgcataaactcccagttcgcttcttgatgcagtcgtt |
535 |
Q |
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| T |
21354699 |
gttctgcttcaaccttagatgtaaaacacaagccatgttggatttcagaattaggataataactgcagaagctcccacttcccttgttgatgcagtccat |
21354600 |
T |
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| Q |
536 |
gtgagattgacataagttgggatgttc |
562 |
Q |
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| T |
21354599 |
gtgagattgacataagttaggatgttc |
21354573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 19006553 - 19006623
Alignment:
| Q |
68 |
ctcttttttaccatcttttggatattgttaattcaaaagtagaaatagtataacattcaaaatcgaagagt |
138 |
Q |
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| T |
19006553 |
ctcttttttaccatcttttggatattgtagattcaaaagtaggaatagtcaacctttcaaaatcggagagt |
19006623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 21354893 - 21354855
Alignment:
| Q |
273 |
atatctaaaagccaactgattagttggaaagaaagatat |
311 |
Q |
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| T |
21354893 |
atatctaaaagccaactgattagttgaaaagaaagatat |
21354855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 318 - 568
Target Start/End: Original strand, 15129143 - 15129396
Alignment:
| Q |
318 |
acatatcaagattaagtggcaatctccacatgcatcttcaaaaatccttttccatt---ggagtaagagatattcttgaggaagttgtttattgtagggt |
414 |
Q |
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| T |
15129143 |
acatatcaagattaagatgcaatctctacaggcatcttcaagaatccatttccattaatggagtgagatacagtcttgaggaagttgtttgttgcaggat |
15129242 |
T |
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| Q |
415 |
tggatagaacctcaaagtagtgttctgcttcaacgttagaggtaaaacaccagccatgttggagttcagaattaggataataagcgcataaactcccagt |
514 |
Q |
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| T |
15129243 |
taatgagaatctcgaagtagcgttcggcttcaacgttagaggtaaaacaccagccatgttcgatatcagaattaggataacgagcacagaaactcccatt |
15129342 |
T |
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| Q |
515 |
tcgcttcttgatgcagtcgttgtgagattgacataagttgggatgttcctcgac |
568 |
Q |
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| T |
15129343 |
tcccttcttgatgcaatctatgtgggattgacataagttgggatgttcttcgac |
15129396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 331 - 469
Target Start/End: Original strand, 15107573 - 15107714
Alignment:
| Q |
331 |
aagtggcaatctccacatgcatcttcaaaaatccttttccattggagtaagagat---attcttgaggaagttgtttattgtagggttggatagaacctc |
427 |
Q |
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| T |
15107573 |
aagtggaaatctctacaggcatcttcaagaatcctttttcattggagttagagatcatattcttgaagaagttgtttattgcagggttagagccaacctc |
15107672 |
T |
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| Q |
428 |
aaagtagtgttctgcttcaacgttagaggtaaaacaccagcc |
469 |
Q |
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| T |
15107673 |
gaagtagcgttctgcttcagcgttagaggtaaaacaccagcc |
15107714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 15107462 - 15107534
Alignment:
| Q |
238 |
catgcacatgctacatttattgaaattcatgaaggatatctaa--aagccaactgattagttggaaagaaagat |
309 |
Q |
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| T |
15107462 |
catgaacatgctacacttatttaaattca-gatggatatctaagaaaaccaactgattagttggaaacaaagat |
15107534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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