View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11626_low_7 (Length: 557)

Name: NF11626_low_7
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11626_low_7
NF11626_low_7
[»] chr5 (1 HSPs)
chr5 (11-539)||(41414309-41414837)
[»] chr7 (1 HSPs)
chr7 (38-535)||(36293968-36294465)
[»] scaffold0204 (2 HSPs)
scaffold0204 (171-539)||(7352-7720)
scaffold0204 (134-529)||(19577-19972)
[»] chr4 (2 HSPs)
chr4 (134-529)||(48332055-48332450)
chr4 (134-538)||(48344064-48344468)


Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Original strand, 41414309 - 41414837
Alignment:
Q  11 acaactaaataacggcgtaaatctttaaaacatgattataatttgtttgaggcggactttttcatacctgacatatgatcatttgtattccgccactgat 110  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41414309 acaactaaataacggcgtggatctttaaaacatgattataatttgtttgaggcggactttttcatacctgacatatgatcatttgtattcccccactgat 41414408  T
Q  111 aagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41414409 aagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcg 41414508  T
Q  211 tctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41414509 tctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatca 41414608  T
Q  311 ccaactctggcctatactttcttttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatc 410  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41414609 ccaactctggcctatactttcttttaagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaagctctgcatc 41414708  T
Q  411 aacatcgctagttcctctaattttctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcct 510  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41414709 aacatcgctagttcctctaattttctctaggagctttcttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcct 41414808  T
Q  511 cctatcgtcatcaaaagagccggtattgc 539  Q
    |||||||||||||||||||||||||||||    
T  41414809 cctatcgtcatcaaaagagccggtattgc 41414837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 38 - 535
Target Start/End: Original strand, 36293968 - 36294465
Alignment:
Q  38 aaacatgattataatttgtttgaggcggactttttcatacctgacatatgatcatttgtattccgccactgataagaagaattctccttcctagcttatc 137  Q
    ||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  36293968 aaacatgattagaatttgtttgagacagattttttcatacctgacatatgatcatttgtattccaccactgataagaagaactctccttcccagcttatc 36294067  T
Q  138 aactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttgaaac 237  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  36294068 aactgttgcgatggaaatgaatgttgagcaagcaagaacgccaccagttaaagccgaggagtagagtgaagcatctccaccaaatcccatgctttgaaac 36294167  T
Q  238 agtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttcttttga 337  Q
    || || ||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |    
T  36294168 agcaccggagcatagaagagaatggaattaatgccagtcaagatctgtgaagttggcatgacaattgccatcaccaactctggcctataccttctttgaa 36294267  T
Q  338 gtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattttctc 437  Q
    ||||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36294268 gtatgttacgaaacgggtgctttattgagtttgccaacttgcttgcatcaaccatatcttcaaactctgcatcaacatcgccagttcctctaattttctc 36294367  T
Q  438 taggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggta 535  Q
    |||||||||||||||| |||||| | ||||||| | |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  36294368 taggagcttccttcctctttcttctaatcctcgttctattaagctgttcggagtctcaggaagaaatattcctcctattgtcatcaaaagagccggta 36294465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 171 - 539
Target Start/End: Complemental strand, 7720 - 7352
Alignment:
Q  171 aagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatg 270  Q
    |||||| || || ||||| |||||||||||||| || ||||||   ||||| |||||||||||||| || || |||||||| |||||||| | |||||||    
T  7720 aagaactcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatg 7621  T
Q  271 ccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttcttttgagtatgttacgaaatgggtgctttattgagttcg 370  Q
    || || |  || ||  | | |||||||   || ||||| |||| ||||||||| ||   | |||  |||||||| || || ||||||||||||||||| |    
T  7620 ccggtaagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttg 7521  T
Q  371 ccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattttctctaggagcttccttcctttttcttgtgatcctcg 470  Q
    |||| || |||||||||||||||||||  ||||| |||||||||||  | |||||||| | ||| || |||| ||||||||||||||| | |||||||||    
T  7520 ccaactcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttcctttgatcctcg 7421  T
Q  471 ctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccggtattgc 539  Q
     | ||||||||| |||||||| || |||| || ||||||||| |  ||||||||||  || ||||||||    
T  7420 ttctattaagctatttggagtctccggaataagtattcctccaacagtcatcaaaaccgctggtattgc 7352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 529
Target Start/End: Complemental strand, 19972 - 19577
Alignment:
Q  134 tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg 233  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||  | || ||||| || ||||||||||| || || | ||  ||||| |||||||||||    
T  19972 tatctactgttgcaatagaaatgaatgttgatccagcaagaactactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttg 19873  T
Q  234 aaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttctt 333  Q
    ||| || | ||||||||| ||||| || |  |||||||| || |  || ||  | |  ||||||   || ||||| ||||||||||| || ||  |||||    
T  19872 aaatagcattggagcataaaagaggattgagtttatgccggtcagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctt 19773  T
Q  334 ttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattt 433  Q
    || || ||||||  | | |||||||||||||| || |||||||| |  || |||| ||||||||  ||||| || || || ||  | |||||||| ||||    
T  19772 ttaaggatgttataataggggtgctttattgaatttgccaattcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattt 19673  T
Q  434 tctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagag 529  Q
    | || ||||||||||| |||| ||| | ||||||||  | ||||||||| |||||||| || |||| |||||||||||| || |||||||||||||    
T  19672 tttcaaggagcttcctcccttgttcctttgatcctctttctattaagctatttggagtctctggaataaatattcctccgatagtcatcaaaagag 19577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 529
Target Start/End: Complemental strand, 48332450 - 48332055
Alignment:
Q  134 tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg 233  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||  | || ||||| || ||||||||||| || || | ||  ||||| |||||||||||    
T  48332450 tatctactgttgcaatagaaatgaatgttgatccagcaagaactactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttg 48332351  T
Q  234 aaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttctt 333  Q
    ||| || | ||||||||| ||||| || |  |||||||| || |  || ||  | |  ||||||   || ||||| ||||||||||| || ||  |||||    
T  48332350 aaatagcattggagcataaaagaggattgagtttatgccggtcagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctt 48332251  T
Q  334 ttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattt 433  Q
    || || ||||||  | | |||||||||||||| || |||||||| |  || |||| ||||||||  ||||| || || || ||  | |||||||| ||||    
T  48332250 ttaaggatgttataataggggtgctttattgaatttgccaattcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattt 48332151  T
Q  434 tctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagag 529  Q
    | || ||||||||||| |||| ||| | ||||||||  | ||||||||| |||||||| || |||| |||||||||||| || |||||||||||||    
T  48332150 tttcaaggagcttcctcccttgttcctttgatcctctttctattaagctatttggagtctctggaataaatattcctccgatagtcatcaaaagag 48332055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 538
Target Start/End: Complemental strand, 48344468 - 48344064
Alignment:
Q  134 tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg 233  Q
    |||| ||||||||||| ||||| ||||||||  | ||||||||  | || ||||| || |||||||| || || || | ||  ||||| |||||||||||    
T  48344468 tatctactgttgcaatagaaatgaatgttgataaggcaagaactactccagtcaaggctgaggagtaaagcgatgcttgtctgccaaatcccatgctttg 48344369  T
Q  234 aaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttctt 333  Q
    ||| || | ||||||||| |||||||| |  ||||| || || |  || ||  | |  ||||||   || ||||| ||||||||||| || ||  |||||    
T  48344368 aaatagcattggagcataaaagagaattgagtttataccggtcagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctt 48344269  T
Q  334 ttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattt 433  Q
    |  || ||||||  | | ||||||||||||||||| |||||||| |  || |||| ||||||||  ||||| || || || ||    |||||||| ||||    
T  48344268 tcaaggatgttataataggggtgctttattgagtttgccaattcacccgcatcaagcatatcttggaactccgcgtcgacctcatctgttcctctgattt 48344169  T
Q  434 tctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttggagtatcaggaagaaatattcctcctatcgtcatcaaaagagccgg 533  Q
    | || ||||||||||| || | ||| | ||||||||  | || |||||| |||||||| || |||| |||||||||||| |  |||||||||||||  ||    
T  48344168 tttcaaggagcttcctcccctgttcctttgatcctctttctactaagctatttggagtctctggaataaatattcctccgacagtcatcaaaagagttgg 48344069  T
Q  534 tattg 538  Q
    |||||    
T  48344068 tattg 48344064  T

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