View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11626_low_8 (Length: 524)
Name: NF11626_low_8
Description: NF11626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11626_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 30768863 - 30768363
Alignment:
| Q |
1 |
aaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaacaattcgtaacttttgtcctaaaaagaagtaggatttcaaaggg |
100 |
Q |
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| T |
30768863 |
aaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaaaaatacataacttttgtcctaaaaagaagtaggacttcaaaggg |
30768764 |
T |
|
| Q |
101 |
cacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttataagcactt |
200 |
Q |
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| T |
30768763 |
cacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactctctttataagcactt |
30768664 |
T |
|
| Q |
201 |
tccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaactttcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30768663 |
tccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaatagaaacaacttttca |
30768564 |
T |
|
| Q |
301 |
tagaaagcatagagaaggtgagaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaag |
400 |
Q |
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| T |
30768563 |
tagaaagcatagagaaggtgggaactagggatgaggagtactggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaag |
30768464 |
T |
|
| Q |
401 |
atcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcct |
500 |
Q |
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| T |
30768463 |
atcgtcacagcaaggtttacacatcaaaaggtcctcgcgatcgcagggttcgactctcagcacacacagccatcgaattctacgatgttcaagatcgcct |
30768364 |
T |
|
| Q |
501 |
c |
501 |
Q |
| |
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| |
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| T |
30768363 |
c |
30768363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 494
Target Start/End: Complemental strand, 39077495 - 39077344
Alignment:
| Q |
343 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
442 |
Q |
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|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
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| T |
39077495 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
39077396 |
T |
|
| Q |
443 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
494 |
Q |
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| T |
39077395 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
39077344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 44573423 - 44573371
Alignment:
| Q |
144 |
aactcatcgttacaaaaccgg-ttgtagggtgaggagtgact-ctctttataa |
194 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44573423 |
aactcatccttacaaaaccggcttgtagggtgaggagtgcctcctctttataa |
44573371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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