View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11627_high_1 (Length: 487)
Name: NF11627_high_1
Description: NF11627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11627_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 39141379 - 39141587
Alignment:
| Q |
18 |
atcattagcctgacgttgctcccgttgtctgagaacatcctaacattgtgatggataagctttattcgcctagtttagtttttgatggtctctcaaattt |
117 |
Q |
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| T |
39141379 |
atcattagcctgacgttgctcccgttgtccgagaacatcctaacattgtgatggataagctttattcgcctagtttagtatttgatggtctctcaaattt |
39141478 |
T |
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| Q |
118 |
agagttggagttcttaatttagtannnnnnnnggttgaacgtaggttttatatgatataatttttcaggtttgatgtttataatttgtaattctattcta |
217 |
Q |
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| T |
39141479 |
agagttggagttcttaatttagtattttttttggttgaacgtaggttttatatgatataattttttaggtttaatgtttataatttgtaattctattcta |
39141578 |
T |
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| Q |
218 |
aaattcacg |
226 |
Q |
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| T |
39141579 |
aaattcacg |
39141587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 337 - 480
Target Start/End: Original strand, 39141720 - 39141867
Alignment:
| Q |
337 |
gcaaatcaatatttatcatggtatggaggtgatttgcaattcaaagtaaatgaacgaaacgcacaggt---at-acttgtagattcacaataagaaagtc |
432 |
Q |
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| T |
39141720 |
gcaaatcaatatttatcatggtatggaggtgatttgcaattcaaagtaaatgaacgaaacgcacaggttagatcacttgtagagtcacaataagaaagtc |
39141819 |
T |
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| Q |
433 |
aagggatttggaagtatggtgtagatatttaggagtctagtacctttg |
480 |
Q |
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| T |
39141820 |
aagggacttggaagtatggtgtagatatttaggagtcaagtacctttg |
39141867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 39141612 - 39141654
Alignment:
| Q |
237 |
tgtgtttaacataaaattta--tcattcgcattatatatgaac |
277 |
Q |
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| T |
39141612 |
tgtgtttaacataaaatttatttcattcgcattatatatgaac |
39141654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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