View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11627_high_2 (Length: 472)
Name: NF11627_high_2
Description: NF11627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11627_high_2 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 265 - 472
Target Start/End: Complemental strand, 39141587 - 39141379
Alignment:
| Q |
265 |
cgtgaattttagaatagaattacaaattataaacatcaaacctgaaaaattatatcatataaaacctacgttcaaccnnnnnnn-tactaaattaagaac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39141587 |
cgtgaattttagaatagaattacaaattataaacattaaacctaaaaaattatatcatataaaacctacgttcaaccaaaaaaaatactaaattaagaac |
39141488 |
T |
|
| Q |
364 |
tccaactctaaatttgagagaccatcaaaaactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcagacaacgggagcaacgtcag |
463 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39141487 |
tccaactctaaatttgagagaccatcaaatactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcggacaacgggagcaacgtcag |
39141388 |
T |
|
| Q |
464 |
gctaatgat |
472 |
Q |
| |
|
||||||||| |
|
|
| T |
39141387 |
gctaatgat |
39141379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 39141867 - 39141720
Alignment:
| Q |
11 |
caaaggtactagactcctaaatatctacaccatacttccaaatcccttgactttcttattgtgaatctacaagt-at---acctgtgcgtttcgttcatt |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
39141867 |
caaaggtacttgactcctaaatatctacaccatacttccaagtcccttgactttcttattgtgactctacaagtgatctaacctgtgcgtttcgttcatt |
39141768 |
T |
|
| Q |
107 |
tactttgaattgcaaatcacctccataccatgataaatattgatttgc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39141767 |
tactttgaattgcaaatcacctccataccatgataaatattgatttgc |
39141720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 39141654 - 39141612
Alignment:
| Q |
214 |
gttcatatataatgcgaatga--taaattttatgttaaacaca |
254 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39141654 |
gttcatatataatgcgaatgaaataaattttatgttaaacaca |
39141612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University