View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11627_high_3 (Length: 414)

Name: NF11627_high_3
Description: NF11627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11627_high_3
NF11627_high_3
[»] chr4 (15 HSPs)
chr4 (1-355)||(41860509-41860863)
chr4 (1-355)||(52681467-52681821)
chr4 (75-222)||(30576541-30576688)
chr4 (198-352)||(15056967-15057124)
chr4 (95-191)||(14991327-14991423)
chr4 (173-219)||(47964110-47964156)
chr4 (349-385)||(41861939-41861975)
chr4 (349-385)||(41862030-41862066)
chr4 (349-385)||(41862121-41862157)
chr4 (349-385)||(41862212-41862248)
chr4 (349-385)||(41862403-41862439)
chr4 (349-385)||(41946638-41946674)
chr4 (349-385)||(41946729-41946765)
chr4 (349-385)||(52680359-52680395)
chr4 (349-385)||(53285696-53285732)
[»] chr8 (2 HSPs)
chr8 (1-355)||(14995116-14995470)
chr8 (349-385)||(22732207-22732243)
[»] chr7 (11 HSPs)
chr7 (1-355)||(22005714-22006068)
chr7 (1-355)||(7892490-7892844)
chr7 (1-356)||(3598880-3599241)
chr7 (98-217)||(13604144-13604262)
chr7 (349-385)||(3600149-3600185)
chr7 (349-385)||(5090967-5091003)
chr7 (349-385)||(7891382-7891418)
chr7 (349-385)||(13927440-13927476)
chr7 (349-385)||(22004323-22004359)
chr7 (349-385)||(22004514-22004550)
chr7 (349-385)||(22004605-22004641)
[»] chr5 (7 HSPs)
chr5 (1-355)||(32674006-32674360)
chr5 (159-355)||(22636691-22636891)
chr5 (124-217)||(21122329-21122422)
chr5 (349-385)||(20844506-20844542)
chr5 (349-385)||(23179540-23179576)
chr5 (349-385)||(23179631-23179667)
chr5 (349-385)||(32672891-32672927)
[»] chr3 (15 HSPs)
chr3 (1-355)||(26950254-26950608)
chr3 (1-355)||(36092439-36092793)
chr3 (1-355)||(18200483-18200837)
chr3 (131-217)||(12807577-12807663)
chr3 (124-211)||(14458470-14458557)
chr3 (349-385)||(854976-855012)
chr3 (349-385)||(6953291-6953327)
chr3 (349-385)||(6953430-6953466)
chr3 (349-385)||(6953812-6953848)
chr3 (349-385)||(18199352-18199388)
chr3 (349-385)||(36093873-36093909)
chr3 (349-385)||(36093964-36094000)
chr3 (349-385)||(36947725-36947761)
chr3 (349-385)||(36947864-36947900)
chr3 (349-385)||(36948003-36948039)
[»] chr2 (9 HSPs)
chr2 (1-355)||(13906996-13907350)
chr2 (1-355)||(26454641-26454995)
chr2 (1-355)||(40604478-40604832)
chr2 (349-385)||(32287325-32287361)
chr2 (349-385)||(13899908-13899944)
chr2 (349-385)||(13905806-13905842)
chr2 (349-385)||(26453534-26453570)
chr2 (349-385)||(35433139-35433175)
chr2 (349-385)||(40603369-40603405)
[»] chr6 (1 HSPs)
chr6 (1-355)||(3590335-3590689)
[»] chr1 (8 HSPs)
chr1 (1-355)||(35595586-35595940)
chr1 (1-355)||(2045885-2046239)
chr1 (90-157)||(52589715-52589782)
chr1 (349-385)||(2051974-2052010)
chr1 (349-385)||(39514207-39514243)
chr1 (349-385)||(45507254-45507290)
chr1 (349-385)||(45507403-45507439)
chr1 (349-385)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (349-385)||(41422-41458)
scaffold0121 (349-385)||(41240-41276)
scaffold0121 (349-385)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (349-385)||(36132-36168)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 41860509 - 41860863
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41860509 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 41860608  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860609 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 41860708  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860709 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 41860808  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860809 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 52681821 - 52681467
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52681821 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaatctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 52681722  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||     
T  52681721 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaat 52681622  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52681621 tgcaaaatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 52681522  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681521 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 30576541 - 30576688
Alignment:
Q  75 aaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattcc 174  Q
    |||||||||| |||||||||||||| ||||| |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | ||||||||||    
T  30576541 aaaagagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattcc 30576640  T
Q  175 aaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacc 222  Q
    |||| | | |||| ||||| ||  |||||||||| |||||||||||||    
T  30576641 aaccgccattttggaaatttctctactgcaaaatgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  198 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 293  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  294 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 352  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 14991423 - 14991327
Alignment:
Q  95 agatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaa 191  Q
    |||||||||||||||||| ||  |||||  | |||||||||||||| |||||| |||||||||  |   ||||||||| ||||||| |||| |||||    
T  14991423 agatagcaatgcaattcagaatctcatcataatacaaataaccaaagatcaaattaaacaaatattttcactcttattacaacccccaattagaaaa 14991327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  173 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 219  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 14995116 - 14995470
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  14995116 taaattatcaccacgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 14995215  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995216 caatgcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 14995315  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995316 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 14995415  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995416 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 22006068 - 22005714
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22006068 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 22005969  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22005968 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaac 22005869  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005868 tgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 22005769  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005768 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 7892844 - 7892490
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  7892844 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 7892745  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  7892744 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaac 7892645  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7892644 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 7892545  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892544 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 3598880 - 3599241
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttcta------gaatataacaaaccgaaaaagagatgataataaatt 94  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||  |||||||||||||||||||||    
T  3598880 taaattatcatcgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagatctagaatataacaaacaaaaaaagagatgataataaatt 3598979  T
Q  95 agatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattc 194  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3598980 agatagcaatgcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattc 3599079  T
Q  195 ctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtaca 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599080 ctgaactacaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtaca 3599179  T
Q  295 atagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 356  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599180 atagaggaattgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 13604144 - 13604262
Alignment:
Q  98 tagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctg 197  Q
    ||||||| ||||| ||| | ||| | |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| |     
T  13604144 tagcaatacaatttaaacactcaccagattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat- 13604242  T
Q  198 aactgcaaaatcaacaaacc 217  Q
    || || ||||||||||||||    
T  13604243 aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32674360 - 32674006
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  32674360 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 32674261  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32674260 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaat 32674161  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32674160 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagag 32674061  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674060 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 159 - 355
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  159 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 254  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  255 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 354  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  355 a 355  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  124 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 217  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 26950608 - 26950254
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  26950608 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagataa 26950509  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950508 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 26950409  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950408 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 26950309  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950308 gaattgaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 36092439 - 36092793
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36092439 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 36092538  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36092539 caatgcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaac 36092638  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092639 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 36092738  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092739 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 18200837 - 18200483
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  18200837 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 18200738  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18200737 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaac 18200638  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18200637 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagag 18200538  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200537 gaattgaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  131 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 217  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  124 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 211  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 13907350 - 13906996
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13907350 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 13907251  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13907250 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaac 13907151  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907150 tgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 13907051  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907050 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 26454995 - 26454641
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  26454995 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 26454896  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  26454895 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaac 26454796  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26454795 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 26454696  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454695 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 40604832 - 40604478
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  40604832 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 40604733  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  40604732 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaac 40604633  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  40604632 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagag 40604533  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604532 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 3590689 - 3590335
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3590689 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 3590590  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3590589 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaac 3590490  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3590489 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagag 3590390  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    ||||||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590389 gaattgaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 35595586 - 35595940
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  35595586 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaggagatgataataaattagatag 35595685  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35595686 caatgcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaac 35595785  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595786 tgcaaaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 35595885  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595886 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 2045885 - 2046239
Alignment:
Q  1 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  2045885 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 2045984  T
Q  101 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  2045985 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaac 2046084  T
Q  201 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2046085 tgcaaaataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 2046184  T
Q  301 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 355  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046185 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
Q  90 aaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 157  Q
    ||||||||||||||||||||||||||| || |   |||||||||||| ||||||||||  ||||||||    
T  52589782 aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat 52589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  349 aggaggatagaaattaggaaatcatggttagggtttg 385  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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