View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11628_high_11 (Length: 312)
Name: NF11628_high_11
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 9232687 - 9232410
Alignment:
| Q |
18 |
atgatcgtcacacacacaaaaaatatgttattttactacagaagtaaagtttaaatttatttaccaaaaacaaacaagatgcttaccattatgcttctaa |
117 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9232687 |
atgatcgtcacacaaaaaaaaaaagtgttattttactacaatagtaaagtttaaatttatttaccaaaaacaaacaagatgcttaccattatgcttctaa |
9232588 |
T |
|
| Q |
118 |
aaatatgttggatgttgtcatatctcgcgacgtagatatttgttgagatattaaaaaatggcttgaatatgtgtctaatcatatctcacaatgtagataa |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9232587 |
aaatatgttggatattgtcatatctcgcgacgtagatatttgttgagatattaaaaaatggtttgaatatgtgtctagtcatatctcacaatgtagataa |
9232488 |
T |
|
| Q |
218 |
ttattgagatattnnnnnnngtggtatgaaaaaatgatatcatggtgaggaaaagttgaattgttgtatattttttgt |
295 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
9232487 |
ttattgagatattaaagaaagtggtatgaaaaaatgatatcatggtgaggaaaagttggattgttatatattttttgt |
9232410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University