View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_high_13 (Length: 272)
Name: NF11628_high_13
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 1541291 - 1541553
Alignment:
| Q |
8 |
aagcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttttcaatag |
107 |
Q |
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| T |
1541291 |
aagcaaaggtgtcgactttcaagtagggtagtcaaaatcaaaacaaattgtaatttgattttaaccattagaagatttgaatttttaactttttcaatag |
1541390 |
T |
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| Q |
108 |
ggaaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgg |
207 |
Q |
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| T |
1541391 |
ggaaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgccgaaattcagagaatattaaaagttgtgcgg |
1541490 |
T |
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| Q |
208 |
gaatttttagagaatcctctagaccactaaactgaatagaatgaacttgtagattaccctatg |
270 |
Q |
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| T |
1541491 |
gaatttttagagaatcctctatcccactaaattgaatagaatgaacttgtagattaccctatg |
1541553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 35120893 - 35120653
Alignment:
| Q |
12 |
aaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaa-tttgattttaaccaccagaagacttgaatttttaactttttcaataggga |
110 |
Q |
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|||| |||||||||| || ||||||| ||||||||||| |||| ||||| |||||||||||||||||||| |||| | ||||| | ||| |||| | |
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| T |
35120893 |
aaagatgtcgacctccaagtagggtaatcaaaatcaaa-caaaatgtaagtttgattttaaccaccagaaagcttggaattttaccatttctaataaagc |
35120795 |
T |
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| Q |
111 |
aaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaa |
210 |
Q |
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| T |
35120794 |
taaaagagaagaagtcatgttgttaaaaatcctcttattgtgttccttcaaaataatgaagagtaccgaaatcgaaacaatattaaaagttgtgtgggat |
35120695 |
T |
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| Q |
211 |
tttttagagaatcct-ctagaccactaaactgaatagaatga |
251 |
Q |
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| T |
35120694 |
tttttagagaatcctcctagaccaccaaactgaatagaatga |
35120653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 42457698 - 42457593
Alignment:
| Q |
147 |
attgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaatttttagagaatc-ctctagaccactaaactgaata |
245 |
Q |
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|||||| |||||| |||||||||| ||| | || ||||||||||||||||||||| || | ||||||||||||| ||||||||| |||||||||| |
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| T |
42457698 |
attgtgatccttctaaataatgaagagtacgaaagcccaaacaatattaaaagttgtatggaattttttagagaatcattctagaccatcaaactgaata |
42457599 |
T |
|
| Q |
246 |
gaatga |
251 |
Q |
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||||| |
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| T |
42457598 |
caatga |
42457593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 23453788 - 23454036
Alignment:
| Q |
10 |
gcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttttcaataggg |
109 |
Q |
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||||||||| ||||||| || | | |||||||||||||| |||| |||| || ||||||||||| ||||| |||| ||||||| |||| |||| | |
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| T |
23453788 |
gcaaaggtgacgacctccaagtcagatagtcaaaatcaaa-caaagtgtagttagattttaaccatcagaatgcttggatttttagattttctaataaag |
23453886 |
T |
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| Q |
110 |
aaaaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcggga |
209 |
Q |
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||||| | |||||||| ||||||||||| || | ||||| |||||| ||||||| ||||| | ||||||||||||||||||||| ||| | || |
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| T |
23453887 |
ctaaaagggaagatgtcctcttgttaaaaatccttcctttgtgatccttccaaataatcaataggaccgaaatccaaacaatattaaaagatgtatgaga |
23453986 |
T |
|
| Q |
210 |
atttttagagaat-cctctagaccactaaactgaatagaatgaacttgta |
258 |
Q |
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| T |
23453987 |
ttttttagagaatccccctaaaccaccaaactgaatagaatgagcttgta |
23454036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 36098057 - 36097966
Alignment:
| Q |
8 |
aagcaaaggtgtcgacctctaaatagggtagtcaaaatcaaaacaaattgtaatttgattttaaccaccagaagacttgaatttttaactttt |
100 |
Q |
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||||||| ||||||||||| || ||||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||||||||| ||||| |
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| T |
36098057 |
aagcaaatgtgtcgacctccaagtagggtaatcaaaatcaaa-caatatgtagtttgattttaaccaccagaaagcttgaatttttacctttt |
36097966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 6831620 - 6831693
Alignment:
| Q |
179 |
aaatccaaacaatattaaaagttgtgcgggaatttttagagaatcctc-tagaccactaaactgaatagaatga |
251 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||| || |||| |||||||||| ||||| |
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| T |
6831620 |
aaatccaaacaatattaaaagttgtacgagaatttttagagaatcctcagaggccaccaaactgaataaaatga |
6831693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 10399031 - 10398933
Alignment:
| Q |
126 |
cctgttgttaaaaattctctcattgtggtccttcaaaataatgaatagtgcacaaatccaaacaatattaaaagttgtgcgggaatttttagagaatcc |
224 |
Q |
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||||||||||||||| ||| ||||| | |||||| |||||||||| | | |||||||||||||||||| || | | |||||||||||||||||||| |
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| T |
10399031 |
cctgttgttaaaaatcctcacattgcgatccttctaaataatgaagaaaaccgaaatccaaacaatattaagagctatacgggaatttttagagaatcc |
10398933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 50617960 - 50618048
Alignment:
| Q |
112 |
aaaagagtcgatgtcctgttgttaaaaattctctcattgtggtccttca-aaataatgaatagtgcacaaatccaaacaatattaaaag |
199 |
Q |
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||||||| |||||||||||||||||||| || ||||| | || ||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
50617960 |
aaaagaggagatgtcctgttgttaaaaatcatcccattgcgctcattcttaaataatgaataggactgaaatccaaacaatattaaaag |
50618048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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