View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11628_high_2 (Length: 922)

Name: NF11628_high_2
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11628_high_2
NF11628_high_2
[»] chr3 (7 HSPs)
chr3 (440-908)||(3364332-3364801)
chr3 (186-438)||(3364035-3364297)
chr3 (228-435)||(18270308-18270515)
chr3 (341-438)||(893663-893761)
chr3 (34-95)||(3363891-3363952)
chr3 (228-438)||(43275264-43275475)
chr3 (1-55)||(3363839-3363893)
[»] chr1 (10 HSPs)
chr1 (236-436)||(11408391-11408592)
chr1 (236-432)||(6504351-6504548)
chr1 (284-438)||(615054-615209)
chr1 (239-438)||(34653204-34653406)
chr1 (1-77)||(17896119-17896195)
chr1 (2-77)||(727043-727118)
chr1 (313-438)||(34117413-34117539)
chr1 (273-438)||(27340221-27340388)
chr1 (346-436)||(14351759-14351850)
chr1 (313-398)||(26237186-26237271)
[»] chr8 (4 HSPs)
chr8 (228-438)||(10408139-10408350)
chr8 (229-439)||(5993936-5994148)
chr8 (228-438)||(20860612-20860821)
chr8 (340-436)||(6443326-6443423)
[»] chr4 (11 HSPs)
chr4 (228-405)||(23054869-23055046)
chr4 (340-436)||(24958263-24958360)
chr4 (9-77)||(40757362-40757430)
chr4 (313-442)||(47519118-47519246)
chr4 (228-438)||(14566577-14566796)
chr4 (228-436)||(53201582-53201788)
chr4 (9-77)||(7103020-7103088)
chr4 (313-438)||(31360732-31360857)
chr4 (349-438)||(34227681-34227771)
chr4 (1-77)||(11423724-11423800)
chr4 (273-416)||(6409335-6409481)
[»] scaffold0341 (1 HSPs)
scaffold0341 (236-432)||(6034-6231)
[»] chr2 (9 HSPs)
chr2 (230-438)||(17374629-17374837)
chr2 (312-438)||(34659580-34659710)
chr2 (230-438)||(11163636-11163842)
chr2 (327-438)||(4868943-4869055)
chr2 (307-438)||(1552251-1552381)
chr2 (345-438)||(1894739-1894833)
chr2 (228-432)||(17282524-17282727)
chr2 (32-77)||(27727684-27727729)
chr2 (375-437)||(30799263-30799326)
[»] chr5 (12 HSPs)
chr5 (228-438)||(27170708-27170921)
chr5 (228-438)||(1377541-1377753)
chr5 (228-432)||(6030920-6031126)
chr5 (341-438)||(7269968-7270066)
chr5 (326-438)||(26656041-26656154)
chr5 (326-438)||(26927628-26927741)
chr5 (348-437)||(38959301-38959391)
chr5 (313-434)||(21600515-21600638)
chr5 (321-438)||(1157868-1157986)
chr5 (340-438)||(18696319-18696418)
chr5 (1-52)||(15908973-15909024)
chr5 (228-289)||(7767625-7767686)
[»] scaffold0009 (1 HSPs)
scaffold0009 (236-436)||(53778-53979)
[»] chr7 (8 HSPs)
chr7 (1-77)||(14070694-14070770)
chr7 (1-77)||(14380722-14380798)
chr7 (228-438)||(29549910-29550121)
chr7 (228-439)||(1777891-1778104)
chr7 (9-77)||(11791508-11791576)
chr7 (346-431)||(26199187-26199273)
chr7 (313-438)||(11699013-11699137)
chr7 (228-439)||(3301737-3301953)
[»] scaffold0005 (1 HSPs)
scaffold0005 (228-438)||(250579-250798)
[»] chr6 (6 HSPs)
chr6 (233-416)||(34213987-34214171)
chr6 (340-432)||(21880758-21880850)
chr6 (310-438)||(1869250-1869377)
chr6 (322-411)||(20739951-20740039)
chr6 (228-295)||(3524153-3524220)
chr6 (353-436)||(24046002-24046085)
[»] scaffold0524 (1 HSPs)
scaffold0524 (9-64)||(10807-10862)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 440 - 908
Target Start/End: Original strand, 3364332 - 3364801
Alignment:
Q  440 taagttataaatcaaaatcacatcaccaaaaagagccacaaactctggttcnnnnnnnnnnnnntaatttataacttcatgtcgggtaggtttccacccg 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||| |||||||||||||||||||||||||    
T  3364332 taagttataaatcaaaatcacatcaccaaaaagagccacaaactctggttcaaaaaaacaaaaataatttataagttcatgtcgggtaggtttccacccg 3364431  T
Q  540 atgtgaaaggtgttttatattttcaaatagctcacaaagtgtcttgtatttttctttgctcattcctaaagtctttctcgtcactgcgtccaatcctttt 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3364432 atgtgaaaggtgttttatattttcaaatagctcacaaagtgtcttgtatttttctttgctcattcctaaagtctttctcgtcactgcgtcctatcctttt 3364531  T
Q  640 ctccgtcgctgctccgtctgtcgtcagccttctacctggaatttctttataagaggttagaaactcca-ttttcctctttcaaatgctgtttcggttcta 738  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3364532 ctccgtccctgctccgtctttcgtcagccttctacctggaatttctttataagaggttagaaactccatttttcctctttcaaatgctgtttcggttcta 3364631  T
Q  739 gttttaagtgcattttcaatttcaaatcttgctgtgttggttttgtgctgtttaattttctgaaaaaactcgaggaactttttggtgggtgatctgtaaa 838  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3364632 gttttaagtgcattttcaatttcaaatcttgctgtgttggttttgtgctgtttaattttctgaaaaaactcgaggaactttttggtgggtgatctgtaaa 3364731  T
Q  839 tacatttttcagcgttatctgtaacctgacgatgtggtgagccccggaacccaactcacataaacttttt 908  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  3364732 tacatttttcagcgttatttgtaccctggcgatgtggtgagccccggagcccaactcacataaacttttt 3364801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 186 - 438
Target Start/End: Original strand, 3364035 - 3364297
Alignment:
Q  186 tcgtattagcttatgtaagtatgttgatcgaggggatagttttgtttcta---------tttattgattttggagataactctttgtaatgaggtctttt 276  Q
    |||||||||||||||||||||||||||| | || ||||||||||||| ||         ||||||||||||||||||| |||||||||||||||  |||     
T  3364035 tcgtattagcttatgtaagtatgttgatggtggtgatagttttgtttttagtgtttttatttattgattttggagatagctctttgtaatgaggcgtttc 3364134  T
Q  277 ctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcata 376  Q
     ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  3364135 ttataagttttttggatttattctttgaagcacggatgtatgagtttttcattgggggctcctcatctatcctttgtatgctgttactttaagactcata 3364234  T
Q  377 gcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattccattttagctttt 438  Q
     ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  3364235 acctaacactccttgtgctggttaagattcattgcaattttaataaattccattttatctttt 3364297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 228 - 435
Target Start/End: Original strand, 18270308 - 18270515
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    |||||||||| ||||||||  |||||| |||||||  | ||||  ||| ||||| ||||||||||||| ||||||||  || || ||||||||||||| |    
T  18270308 tgtttctattaattgatttcagagatagctctttgctaggaggcgtttcctataggttttttggattttttctttgattcacgggtgtatgggtttttca 18270407  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattcc 426  Q
    |||| |||  | |||||||||||||||||||  || ||||||||||| |||||| || | ||||| |  ||||||||||||| ||| |||||||||||||    
T  18270408 ttggaggcaccccatctatcctttgtatgttacta-tttaaaactcacagcctagcatttcttgtaccggttaagattcatttcaattttaataaattcc 18270506  T
Q  427 attttagct 435  Q
    |||||||||    
T  18270507 attttagct 18270515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 893663 - 893761
Alignment:
Q  341 atctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaattt-aataaattccattttagctttt 438  Q
    ||||||| ||||||||||  |||||||| |||| ||||||| || |||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||    
T  893663 atctatcatttgtatgtttctactttaagactcctagcctagcactccttgtgctggttaagatttattgcgattttaataaattccattttagctttt 893761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 3363891 - 3363952
Alignment:
Q  34 aagaatttgttgagcctcaaaggggagaaaattttcattaattatctttcaaataagattac 95  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  3363891 aagaatttgttgagcatcaaagggcaaaaaattttcattaattatctttcaaataagattac 3363952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 43275475 - 43275264
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    ||||||||||||||||||| ||||||| | |||||| | ||    ||||||||| ||||||||||||| || ||| |  ||    ||||||| ||||  |    
T  43275475 tgtttctatttattgatttcggagatagccctttgttaggacacgttttctataggttttttggatttttttttttattcacaagtgtatggattttcca 43275376  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattcc 426  Q
    || |||||| | | |||||||||||||||||| |||||||  |||| ||| ||| || ||||| ||||  |||||||||||||| | ||||||||||| |    
T  43275375 tttggggctccccttctatcctttgtatgttgctactttatgactcctaggctagcactccttatgctgattaagattcattgcgattttaataaatttc 43275276  T
Q  427 attttagctttt 438  Q
    ||| ||||||||    
T  43275275 attctagctttt 43275264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3363839 - 3363893
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaag 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  3363839 atcttgtgattgagagaaagaaattggcaactgaagaatttgttgagcatcaaag 3363893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 236 - 436
Target Start/End: Original strand, 11408391 - 11408592
Alignment:
Q  236 tttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggc 335  Q
    ||||||||||| ||||||| |||||||| | | ||| |||||||||| ||||||||||||  ||||||| ||| || |||||| |||||| |||||||||    
T  11408391 tttattgatttcggagatagctctttgttaggtggtgttttctataaattttttggattttgtctttgatgcacgggtgtatgagtttttcattgggggc 11408490  T
Q  336 ttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattccattttagc 434  Q
    | | | |||||||||||||||||  |||||||| ||||||| |||| || |||||||||| |||| |||||||||||| |||||||||||||||||||||    
T  11408491 tccccgtctatcctttgtatgttactactttaagactcataacctagcactccttgtgctggttatgattcattgcaattttaataaattccattttagc 11408590  T
Q  435 tt 436  Q
    ||    
T  11408591 tt 11408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 236 - 432
Target Start/End: Original strand, 6504351 - 6504548
Alignment:
Q  236 tttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggc 335  Q
    ||||||||||| | ||||||| |||||| | || || |||  ||||||||||||||||||  ||||||| ||| |||||||||||||||  |||||||||    
T  6504351 tttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatgcacggatgtatgggttttccattgggggc 6504450  T
Q  336 ttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccatttta 432  Q
    | | |||||||||||| ||||||| ||| |||| ||||||||||||||| |||||||||| ||||  ||||||||  | |||||||||||| ||||||    
T  6504451 tccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattcattgtgattttaataaattctatttta 6504548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 615209 - 615054
Alignment:
Q  284 ttttttggatttattctttgaagcatggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaac 383  Q
    |||||||||||| ||||||||  || || ||||||| ||||  |||||||||| | |||||||||||||||||||| |||||||| |||| |||| || |    
T  615209 ttttttggattttttctttgattcacgggtgtatggattttccattgggggctccccatctatcctttgtatgttgctactttaagactcctagcatagc 615110  T
Q  384 agtccttgtgcttgttaagattcattgc-aatttaataaattccattttagctttt 438  Q
    | | |||||||| ||||||||||||| | | ||||||||||||||||||| |||||    
T  615109 acttcttgtgctagttaagattcatttcgattttaataaattccattttaactttt 615054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 239 - 438
Target Start/End: Complemental strand, 34653406 - 34653204
Alignment:
Q  239 attgattttggagataactctttgtaatgaggtcttttctataagttttttggatttatt--ctttgaagcatggatgtatgggttttttattgggggct 336  Q
    |||||||| ||| ||||| |||||| | ||||| ||| |||||  |||||||||||| ||  ||||||  || || |||||| |||||| |||| || ||    
T  34653406 attgatttcggatataaccctttgttaggaggtgtttcctatagtttttttggattttttttctttgattcacgggtgtatgagtttttcattgaggact 34653307  T
Q  337 tctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattccattttagct 435  Q
     |||||||||||||||| ||||  || ||||| |||   ||| || || ||||||| || ||||||||||||||| | ||||||||||||||||||| ||    
T  34653306 cctcatctatcctttgtttgttactattttaagacttcaagcgtagcactccttgtactcgttaagattcattgcgattttaataaattccattttaact 34653207  T
Q  436 ttt 438  Q
    |||    
T  34653206 ttt 34653204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17896119 - 17896195
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    |||||||  |||||||||||||||||| ||||| ||||||||||||| |||||| |||||||| |||| ||||||||    
T  17896119 atcttgtagttgagagaaagaaattggcaactggagaatttgttgagactcaaaagggagaaatttttaattaatta 17896195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 727043 - 727118
Alignment:
Q  2 tcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    |||||| |||| |||||| ||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||||    
T  727043 tcttgtaattgggagaaaaaaaatggcaattgaagaatttgttgagcctcaaaggggagaaaagtatcattaatta 727118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 313 - 438
Target Start/End: Complemental strand, 34117539 - 34117413
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-c 411  Q
    ||||||||| ||  |||| ||||||| |||||||||||||||||||| || | ||| |||| |||| || || |||||||||| ||||||||| ||||      
T  34117539 tgtatgggtcttccattgagggcttcccatctatcctttgtatgttgctattgtaagactcttagcttagcactccttgtgctggttaagattaattgtg 34117440  T
Q  412 aatttaataaattccattttagctttt 438  Q
      ||||||||||| |||||||||||||    
T  34117439 gttttaataaatttcattttagctttt 34117413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 273 - 438
Target Start/End: Original strand, 27340221 - 27340388
Alignment:
Q  273 ttttctataagttttttggattta-ttctttgaagcatggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaac 371  Q
    |||| |||| |||||||||||||  || ||||| ||| |  |||||| |||||  ||||  |||||| |||||||||||| ||||||| |||||||| ||    
T  27340221 ttttttataggttttttggattttcttatttgatgcacgagtgtatgagttttccattgaaggcttcccatctatcctttttatgttgctactttaagac 27340320  T
Q  372 tcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccattttagctttt 438  Q
    || ||| ||| || || ||||||  |||| ||||||||| || ||||||||||| |||||||| ||||    
T  27340321 tcgtagtctagcactctttgtgccggttaggattcattgccattttaataaatttcattttagttttt 27340388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 436
Target Start/End: Original strand, 14351759 - 14351850
Alignment:
Q  346 tcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaattt-aataaattccattttagctt 436  Q
    |||||||||||||| |||||||| | || ||| ||| || |||||||||| | || ||||| ||||| ||| |||||||| |||||||||||    
T  14351759 tcctttgtatgttgctactttaagattcctagtctagcattccttgtgctcgctaggattctttgcattttgaataaatttcattttagctt 14351850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Original strand, 26237186 - 26237271
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgt 398  Q
    |||||| |||||||||| ||| || ||||| |||||||||||| ||| || ||||| |||| | | |||| | |||||||||||||    
T  26237186 tgtatgagttttttatttgggactcctcatttatcctttgtatattgctattttaagactcctcgtctaaaactccttgtgcttgt 26237271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 10408350 - 10408139
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    ||||||||||||||||||| ||||||||| |||||| | ||||| ||| ||||| |||||||||||||  |||||||  ||||| ||||||||||||  |    
T  10408350 tgtttctatttattgatttcggagataaccctttgttaggaggtgtttcctataggttttttggattttatctttgattcatgggtgtatgggttttcca 10408251  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattcc 426  Q
    ||||||||| | ||||||| ||||||||||||  ||| ||| |||  |||||||||| ||||| |||| ||||||||| ||||  | |||||||||||||    
T  10408250 ttgggggctccccatctatgctttgtatgttgcaactctaagacttctagcctaacactccttttgctggttaagatttattgtgattttaataaattcc 10408151  T
Q  427 attttagctttt 438  Q
    |||||| |||||    
T  10408150 attttatctttt 10408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 229 - 439
Target Start/End: Complemental strand, 5994148 - 5993936
Alignment:
Q  229 gtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttgga-tttattctttgaagcatggatgtatgggtttttta 327  Q
    |||||||| ||||||||| | | ||| |||||||| | ||||  ||| ||||| |||||||||| ||| |||||||| ||| || ||||||||||||  |    
T  5994148 gtttctatctattgatttcgaatatagctctttgttaggaggcgtttcctataggttttttggaattttttctttgatgcacgggtgtatgggttttcca 5994049  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattcc 426  Q
    |||| || | | |||||||||||||||||||| |||||||| |||| ||||||| || ||||||||||  |||||||||||||| | |||||||||||||    
T  5994048 ttggaggttccccatctatcctttgtatgttgctactttaagactcctagcctagcactccttgtgctgattaagattcattgcgattttaataaattcc 5993949  T
Q  427 attttagctttta 439  Q
    |||||||||||||    
T  5993948 attttagctttta 5993936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 20860821 - 20860612
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    ||||||||||||||| ||| ||||||| | |||| | | ||||  ||| ||||| || |||||||||| ||||||||  ||    |||||| |||||  |    
T  20860821 tgtttctatttattggtttcggagatagcccttttttaggaggcgtttcctata-gtgttttggattt-ttctttgattcacttgtgtatgagttttcca 20860724  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattcc 426  Q
    ||||| ||| | |||||||||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||||| | |||||||||||||    
T  20860723 ttgggagctccccatctatcctttgtatgttgctactttaagactcctcgcctaacactccttgtgctggttaagattcattgcgattttaataaattcc 20860624  T
Q  427 attttagctttt 438  Q
    |||||| |||||    
T  20860623 attttaactttt 20860612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 6443423 - 6443326
Alignment:
Q  340 catctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccattttagctt 436  Q
    |||||||| ||||||||||| |||  ||| |||| ||||||| || |||||||||| |||| |||||||||  | ||||||||||| |||||||||||    
T  6443423 catctatcatttgtatgttgctacgataagactcctagcctagcactccttgtgctggttaggattcattgtgattttaataaatttcattttagctt 6443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 228 - 405
Target Start/End: Original strand, 23054869 - 23055046
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    ||||||||||||| | ||||||||||||  |||||| | ||||| ||||||||| ||||| ||||||| ||||||||| || || ||||||| ||||| |    
T  23054869 tgtttctatttatagtttttggagataatcctttgttaggaggtgttttctataggttttatggattttttctttgaatcacgggtgtatggatttttca 23054968  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagatt 405  Q
    || | ||||||||||||||||||||||||||  || ||||| |||| |||||||||| |||||||||| |||||||||    
T  23054969 ttagcggcttctcatctatcctttgtatgttactattttaagactcttagcctaacactccttgtgctggttaagatt 23055046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 24958263 - 24958360
Alignment:
Q  340 catctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattccattttagctt 436  Q
    |||||||||||||||||||| |||||||| |||| ||||||| || |||||||||| || | |||||||||||| |||||||||||||||||| ||||    
T  24958263 catctatcctttgtatgttgctactttaagactcctagcctagcattccttgtgctggtcaggattcattgcaattttaataaattccattttcgctt 24958360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 40757362 - 40757430
Alignment:
Q  9 attgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    ||||||||||||||||||  || ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  40757362 attgagagaaagaaattgacaattgaagaatttgttgagcctcaaaagggagaaaaatttcattaatta 40757430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 47519118 - 47519246
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgca 412  Q
    ||||||||||||  |||||||||||| |||| ||||||||| ||||| || | ||| |||| || ||||||| |||||||||| ||||||||| ||||      
T  47519118 tgtatgggttttccattgggggcttcccatc-atcctttgtttgttgctagtgtaagactcttaacctaacactccttgtgctggttaagatttattgtt 47519216  T
Q  413 at-ttaataaattccattttagcttttataa 442  Q
    || ||||||||||||||||||| ||||||||    
T  47519217 atcttaataaattccattttag-ttttataa 47519246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 228 - 438
Target Start/End: Original strand, 14566577 - 14566796
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttatt--ctttgaagcatggatgtatgggttttt 325  Q
    |||||||||||| |||||| ||||||| | |||||| | ||||  ||| ||||| | ||||||||||| ||  ||||||  || || |||||| | |||     
T  14566577 tgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctatagggtttttggattttttttctttgattcacgggtgtatgaggtttc 14566676  T
Q  326 tattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgctt------gttaagattcattgc-aatttaa 418  Q
     |||||||||| | |||||||| ||||||||||| || ||||| |||| || |||| || |||||||||||      ||||||||||||||| | |||||    
T  14566677 cattgggggctccccatctatcatttgtatgttgctattttaagactcctaacctagcactccttgtgcttgtgctggttaagattcattgcgattttaa 14566776  T
Q  419 taaattccattttagctttt 438  Q
    || |||| ||||||||||||    
T  14566777 tacattctattttagctttt 14566796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 228 - 436
Target Start/End: Complemental strand, 53201788 - 53201582
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    ||||||||||||||||||| ||||||| | |||||| | ||||| ||| ||||| |||||| |||||| |  ||     || || ||||||| ||||  |    
T  53201788 tgtttctatttattgatttcggagatagccctttgttaggaggtgtttcctataggttttt-ggatttttatttattttcacgggtgtatggattttcca 53201690  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaat-ttaataaattcc 426  Q
    ||||||| ||| |||| ||||||||| | |||||||| ||| |||| |||||||||| |||||||||  ||||||||| ||||| || |||| |||||||    
T  53201689 ttgggggtttc-catc-atcctttgtttattgttactgtaagactcctagcctaacattccttgtgccggttaagattaattgctatattaacaaattcc 53201592  T
Q  427 attttagctt 436  Q
    ||||||||||    
T  53201591 attttagctt 53201582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 7103088 - 7103020
Alignment:
Q  9 attgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    ||||||||||||||||| | || ||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  7103088 attgagagaaagaaattagcaattgaagaatttgttgagccttaaaagggagaaaagtttcattaatta 7103020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 313 - 438
Target Start/End: Original strand, 31360732 - 31360857
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgca 412  Q
    ||||||||||||| |||||||||||| |||| ||| ||||| ||||| |||| ||| |||  | |||||||| |||||||||| | ||||||||| ||      
T  31360732 tgtatgggtttttcattgggggcttcccatc-atcatttgtgtgttgctactataagacttctggcctaacactccttgtgctggctaagattcagtgtt 31360830  T
Q  413 at-ttaataaattccattttagctttt 438  Q
    || |||||||||| |||||||||||||    
T  31360831 atcttaataaatttcattttagctttt 31360857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 34227681 - 34227771
Alignment:
Q  349 tttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattccattttagctttt 438  Q
    ||||| ||||| |||||||| |||| ||||||||||  | ||||||| ||||||||||||||| |  ||||||| ||||||||||| ||||    
T  34227681 tttgtttgttgctactttaagactcttagcctaacacgctttgtgctggttaagattcattgcgagattaataagttccattttagttttt 34227771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11423724 - 11423800
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    ||||||| ||| ||||| | ||||||| || ||||||||||||| | ||||||| ||||||||| | ||||||||||    
T  11423724 atcttgtaattaagagagaaaaattggcaattgaagaatttgttcaacctcaaaagggagaaaaatgtcattaatta 11423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 273 - 416
Target Start/End: Complemental strand, 6409481 - 6409335
Alignment:
Q  273 ttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaact 372  Q
    ||||||||| |||||||| || |  ||||||| ||| || ||||||||||||  ||||| ||| ||||  ||||||||| ||||||| |||||||| |||    
T  6409481 ttttctataggttttttgaatattatctttgatgcacgggtgtatgggttttccattggaggc-tctccactatcctttatatgttgctactttaatact 6409383  T
Q  373 cata----gcctaacagtccttgtgcttgttaagattcattgcaattt 416  Q
    | ||    |||||||| ||||| | | |||||| |||||||| |||||    
T  6409382 cctagcgcgcctaacactccttatacatgttaacattcattgtaattt 6409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 78; Significance: 8e-36; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 236 - 432
Target Start/End: Original strand, 6034 - 6231
Alignment:
Q  236 tttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggc 335  Q
    ||||||||||| | ||||||| |||||| | || || |||  ||||||||||||||||||  ||||||| ||| |||||||||||||||  |||||||||    
T  6034 tttattgatttcgaagataaccctttgttaggatgtgtttcttataagttttttggattttgtctttgatgcacggatgtatgggttttccattgggggc 6133  T
Q  336 ttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccatttta 432  Q
    | | |||||||||||| ||||||| ||| |||| ||||||||||||||| |||||||||| ||||  ||||||||  | |||||||||||| ||||||    
T  6134 tccccatctatcctttatatgttgctacattaagactcatagcctaacactccttgtgctagttagaattcattgtgattttaataaattctatttta 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 230 - 438
Target Start/End: Complemental strand, 17374837 - 17374629
Alignment:
Q  230 tttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttatt 329  Q
    ||||||||||||||||| ||||||| | || | | | ||||  ||| ||||| ||||||||||||| ||||||||  || || |||||| |||||| |||    
T  17374837 tttctatttattgatttcggagatagccctctcttaggaggcgtttcctataggttttttggattttttctttgattcacgggtgtatgagtttttcatt 17374738  T
Q  330 gggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccat 428  Q
     |||||| | |||||||||||||||| ||| | |||||| |||| |||| ||||| |||||||||| ||||||||||||||  | ||||||||||| |||    
T  17374737 aggggctccccatctatcctttgtatattgct-ctttaagactcctagcttaacactccttgtgctggttaagattcattgtgattttaataaatttcat 17374639  T
Q  429 tttagctttt 438  Q
    ||||| ||||    
T  17374638 tttagttttt 17374629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 312 - 438
Target Start/End: Complemental strand, 34659710 - 34659580
Alignment:
Q  312 atgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacag---tccttgtgcttgttaagattcat 408  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||| |||| || |||| |||   |||| ||||| ||||||||||||    
T  34659710 atgtatgggttttctattgggagctcctcatctatcctttgtatgttgctactttaagactcctaacctagcagcactcctcgtgctggttaagattcat 34659611  T
Q  409 tgc-aatttaataaattccattttagctttt 438  Q
    ||| | ||||||||||| |||||||||||||    
T  34659610 tgcgattttaataaatttcattttagctttt 34659580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 230 - 438
Target Start/End: Original strand, 11163636 - 11163842
Alignment:
Q  230 tttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttatt 329  Q
    ||||||||||||||||||||| ||| | |||||| | ||||| |||||||||||||||||   ||| || ||| |  || || |||||| |||||| |||    
T  11163636 tttctatttattgattttggatatagccctttgttaggaggtgttttctataagttttttt--tttttttttttattcacgggtgtatgagtttttcatt 11163733  T
Q  330 gggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaat-ttaataaattccat 428  Q
    ||   ||||||||||||||||| ||||||  |||||||| |||| || |||| || ||| ||| || |||||||||||| || || ||||||||||||||    
T  11163734 ggat-cttctcatctatcctttatatgttactactttaagactcctaacctagcactccctgtactggttaagattcatcgcgatgttaataaattccat 11163832  T
Q  429 tttagctttt 438  Q
    ||||| ||||    
T  11163833 tttagttttt 11163842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 327 - 438
Target Start/End: Complemental strand, 4869055 - 4868943
Alignment:
Q  327 attgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattc 425  Q
    |||||||||| | | |||||||||||||||||| |||||||| |||| ||||||| || ||||||||||  |||||||||||| | | |||||||||||     
T  4869055 attgggggctccccgtctatcctttgtatgttgctactttaagactcctagcctagcactccttgtgctgattaagattcatttcgattttaataaattt 4868956  T
Q  426 cattttagctttt 438  Q
    |||||||| ||||    
T  4868955 cattttagttttt 4868943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 307 - 438
Target Start/End: Original strand, 1552251 - 1552381
Alignment:
Q  307 catggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattc 406  Q
    ||||| ||||||||||||  |||||| ||||| || | ||||||||| ||||| |||| ||| |||| ||||||| || |||||||||| ||||||||||    
T  1552251 catgggtgtatgggttttc-attgggagcttcccacc-atcctttgtttgttgctactgtaagactcttagcctagcactccttgtgctcgttaagattc 1552348  T
Q  407 attgcaat-ttaataaattccattttagctttt 438  Q
    ||||| || ||||||||||| |||||| |||||    
T  1552349 attgctatcttaataaattctattttaactttt 1552381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 345 - 438
Target Start/End: Complemental strand, 1894833 - 1894739
Alignment:
Q  345 atcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaat-ttaataaattccattttagctttt 438  Q
    ||||||||| ||||| |||  ||| |||| |||||||||| |||||||||| ||||| ||||||||| || ||||||||||| ||||||||||||    
T  1894833 atcctttgtttgttgctaccgtaagactcctagcctaacactccttgtgctggttaaaattcattgctatcttaataaattctattttagctttt 1894739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 17282524 - 17282727
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaag-catggatgtatgggtttttt 326  Q
    ||||||||||||||||||| ||||||| | |||||| | ||||  ||| ||||| |||||| |||||| ||||||     || || |||||| |||||      
T  17282524 tgtttctatttattgatttcggagatagccctttgttaggaggcgtttcctataggttttt-ggattt-ttctttattttcacgggtgtatgagttttac 17282621  T
Q  327 attgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaat-ttaataaattc 425  Q
    |||||||||||| |||| ||||||||| ||||| |||  ||| |||| ||||||| || || ||||||| ||||||||| ||||  || |||||||||||    
T  17282622 attgggggcttcccatc-atcctttgtttgttgctaccgtaagactcctagcctagcactctttgtgctggttaagattaattgttatcttaataaattc 17282720  T
Q  426 catttta 432  Q
    |||||||    
T  17282721 catttta 17282727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 27727684 - 27727729
Alignment:
Q  32 tgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  27727684 tgaagaatttgttgagcctcaaaagggagaaaaatttcattaatta 27727729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 30799326 - 30799263
Alignment:
Q  375 tagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattccattttagcttt 437  Q
    |||||||||| | |||||||| ||||||||||||||| | ||||||||||| ||||||| ||||    
T  30799326 tagcctaacacttcttgtgctggttaagattcattgcgattttaataaatttcattttaacttt 30799263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 228 - 438
Target Start/End: Original strand, 27170708 - 27170921
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatgg----atgtatgggttt 323  Q
    ||||||||||||||| ||| ||||||| |  ||||| | ||||  ||| ||||| |||||| |||||| ||||||||  | |||    ||||||||||||    
T  27170708 tgtttctatttattggtttcggagatagccatttgttaggaggcgtttcctataggtttttcggattttttctttgattcttgggtgtatgtatgggttt 27170807  T
Q  324 tttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaa 422  Q
    |  |||| ||||| | |||||||||||||||||||| || ||||| |||| ||||||| || |||||||||| ||||||||||||||| | |||||||||    
T  27170808 tccattgagggctccccatctatcctttgtatgttgcta-tttaagactcctagcctatcactccttgtgctggttaagattcattgcgattttaataaa 27170906  T
Q  423 ttccattttagctttt 438  Q
    || ||||||| |||||    
T  27170907 tt-cattttaactttt 27170921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 1377753 - 1377541
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtctttt--ctataagttttttggatttatt-ctttgaagcatggatgtatgggtttt 324  Q
    |||||||||||||| |||| ||||||||  |||||| | ||||  ||||  ||||| ||||||||||||| || ||||||  ||||| ||||||||| ||    
T  1377753 tgtttctatttattaatttcggagataatcctttgttaggaggcgtttttcctata-gttttttggatttttttctttgattcatgggtgtatgggtctt 1377655  T
Q  325 ttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaattt-aataaat 423  Q
      ||| ||  || | |||||||| |||||||||||||||||||| |||| || ||||||| |||||||||| ||||||||| ||||| |||| |||||||    
T  1377654 ccattagga-ctccccatctatcatttgtatgttgttactttaagactcctaacctaacattccttgtgctggttaagattaattgcgatttgaataaat 1377556  T
Q  424 tccattttagctttt 438  Q
    | ||||||| |||||    
T  1377555 ttcattttaactttt 1377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 6030920 - 6031126
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggtttttta 327  Q
    |||||||||| ||||||||  |||||  | |||||  | ||||  ||| ||||||||||||||||||| || |||||  || || ||||||||||||  |    
T  6030920 tgtttctattaattgatttcagagatggccctttgctaggaggcgtttcctataagttttttggattttttatttgattcacgggtgtatgggttttcca 6031019  T
Q  328 ttgggggcttctcatctatcctttgtatgttgttac-tttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattc 425  Q
    ||||| ||| | | |||||||||||||||||  ||| ||||| ||| ||||||||||| || ||||||| ||||||||||||| | | |||||||||||     
T  6031020 ttgggagctccccgtctatcctttgtatgttactacttttaagacttatagcctaacactctttgtgctggttaagattcatttcgattttaataaattt 6031119  T
Q  426 catttta 432  Q
    |||||||    
T  6031120 catttta 6031126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 7270066 - 7269968
Alignment:
Q  341 atctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattccattttagctttt 438  Q
    ||||||||||||||||||| |||||||| |||| ||||||| || |||||||||| ||||||||||||||| | |||||||||||  ||||||||||||    
T  7270066 atctatcctttgtatgttgctactttaagactcctagcctagcattccttgtgctggttaagattcattgcgattttaataaattttattttagctttt 7269968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 326 - 438
Target Start/End: Complemental strand, 26656154 - 26656041
Alignment:
Q  326 tattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaatt 424  Q
    |||| |||||| | |||||||||||||||| ||| |||||||| |||| ||||||| || | |||||||| ||||||||||||||| | |||||||||||    
T  26656154 tattaggggctccccatctatcctttgtatattgatactttaagactcctagcctagcattgcttgtgctggttaagattcattgcgattttaataaatt 26656055  T
Q  425 ccattttagctttt 438  Q
    |||||||| |||||    
T  26656054 ccattttacctttt 26656041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 326 - 438
Target Start/End: Complemental strand, 26927741 - 26927628
Alignment:
Q  326 tattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaatt 424  Q
    |||| |||||| | |||||||||||||||| ||| |||||||| |||| ||||||| || | |||||||| ||||||||||||||| | |||||||||||    
T  26927741 tattaggggctccccatctatcctttgtatattgatactttaagactcctagcctagcattgcttgtgctggttaagattcattgcgattttaataaatt 26927642  T
Q  425 ccattttagctttt 438  Q
    |||||||| |||||    
T  26927641 ccattttacctttt 26927628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 38959301 - 38959391
Alignment:
Q  348 ctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaat-ttaataaattccattttagcttt 437  Q
    |||||| ||||| |||| ||| |||| ||||||| || |||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  38959301 ctttgtttgttgctactgtaagactcttagcctagcactccttgtgctagttaagattcattgctatcttaataaattccattttagcttt 38959391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 21600638 - 21600515
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactc--atagcctaacagtccttgtgcttgttaagattcattg 410  Q
    ||||||||||||  |||||||||||| |||| ||| ||||| ||||| |||  ||| ||||  ||||||||||| ||||||| || ||||||||||||||    
T  21600638 tgtatgggttttccattgggggcttcccatc-atcatttgtttgttgctacggtaagactctcatagcctaacactccttgtactggttaagattcattg 21600540  T
Q  411 caat-ttaataaattccattttagc 434  Q
    | || ||||||||||||||||||||    
T  21600539 ctatcttaataaattccattttagc 21600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 321 - 438
Target Start/End: Original strand, 1157868 - 1157986
Alignment:
Q  321 ttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagccta-acagtccttgtgcttgttaagattcattgcaat-ttaa 418  Q
    ||||| |||||||||||| |||| ||||||| | ||||| |||| ||| |||| ||||||| ||| | |||||||| ||||||||| ||||| || ||||    
T  1157868 tttttcattgggggcttcccatc-atcctttatttgttgctactgtaagactcctagcctagacactgcttgtgctggttaagatttattgctatcttaa 1157966  T
Q  419 taaattccattttagctttt 438  Q
    |||||||||||||| |||||    
T  1157967 taaattccattttaactttt 1157986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 340 - 438
Target Start/End: Complemental strand, 18696418 - 18696319
Alignment:
Q  340 catctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattg-caatttaataaattccattttagctttt 438  Q
    |||||||| |||| |||||| || | |||||||| |||||||||  || ||||||  |||||||||||||| || ||||||||||| |||||||||||||    
T  18696418 catctatcgtttgcatgttgctattgtaaaactcctagcctaactctcgttgtgccggttaagattcattgccattttaataaatttcattttagctttt 18696319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15908973 - 15909024
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctca 52  Q
    ||||||| ||||||| ||||||||||  || |||||||||||||||||||||    
T  15908973 atcttgtaattgagataaagaaattgacaattgaagaatttgttgagcctca 15909024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 7767625 - 7767686
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagtttttt 289  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||  ||| ||||| |||||||    
T  7767625 tgtttatatttattgattttggagataaccctttgttaggaggcgtttcctataggtttttt 7767686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 236 - 436
Target Start/End: Complemental strand, 53979 - 53778
Alignment:
Q  236 tttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattgggggc 335  Q
    ||||||||||||||||||| | |||||| | ||| | ||| || || |||||||| ||||  ||||||| ||| || |||||| ||||   |||||| ||    
T  53979 tttattgattttggagatatccctttgttaggagatgtttcctgtaggttttttgaattttgtctttgatgcacgggtgtatgagtttacaattgggtgc 53880  T
Q  336 ttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattccattttagc 434  Q
    | | ||||||||| |||||||||| |||||||  |||| ||||||||||  | ||||||| |||| ||||||||| || |||||| ||||| ||||| ||    
T  53879 tccccatctatccattgtatgttgctactttacgactcctagcctaacacgcattgtgctggttatgattcattgtaattttaatcaattctattttggc 53780  T
Q  435 tt 436  Q
    ||    
T  53779 tt 53778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14070694 - 14070770
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    |||||| |||||| ||||||||||| | || ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14070694 atcttgcgattgaaagaaagaaatttgcaattgaagaatttgttgagcctcaaaagggagaaaaatttcattaatta 14070770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14380722 - 14380798
Alignment:
Q  1 atcttgtgattgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    |||||| |||||| ||||||||||| | || ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14380722 atcttgcgattgaaagaaagaaatttgcaattgaagaatttgttgagcctcaaaagggagaaaaatttcattaatta 14380798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 29550121 - 29549910
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctata-agttttttggatttattctttgaagcatggatgtatgggtttttt 326  Q
    ||||||||||||||||||| ||||||| | |||||| ||||||  ||||||||| | ||||||| |||| ||||||||  ||||  |||||||  ||||     
T  29550121 tgtttctatttattgatttcggagatagccctttgttatgaggcgttttctatatatttttttgaattttttctttgattcatgcgtgtatggacttttc 29550022  T
Q  327 attgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattc 425  Q
    ||| ||||||   |||||||||||| ||||||| |||||||| |||| ||||  |||| || || | |  ||||||||||||||| | |||||||||||     
T  29550021 att-ggggctctccatctatcctttatatgttgctactttaagactcctagcgaaacactctttataccggttaagattcattgcgattttaataaattt 29549923  T
Q  426 cattttagctttt 438  Q
     ||||||| ||||    
T  29549922 tattttagttttt 29549910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 228 - 439
Target Start/End: Complemental strand, 1778104 - 1777891
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttt-tttggatttatt--ctttgaagcatggatgtat--gggtt 322  Q
    |||||||||||||||||||  ||||||||||||||  | ||||  ||| ||||| | || ||||||||| ||  |||||| ||| |  |||||  |||||    
T  1778104 tgtttctatttattgatttcagagataactctttgatacgaggcatttcctatagggttgtttggattttttttctttgatgcacgagtgtatatgggtt 1778005  T
Q  323 ttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattca-ttgcaatttaataa 421  Q
    ||  |||||||||| | ||||||| |||||||||||| |||||    |||| |||| || || ||||| |||| ||||||||||| ||| | ||||| ||    
T  1778004 ttccattgggggctccccatctattctttgtatgttgctactt----actcttagcttagcactccttatgctggttaagattcatttgaattttaagaa 1777909  T
Q  422 attccattttagctttta 439  Q
    ||||||||||||||||||    
T  1777908 attccattttagctttta 1777891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 11791508 - 11791576
Alignment:
Q  9 attgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaattttcattaatta 77  Q
    |||| |||||||||||||  || ||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  11791508 attgcgagaaagaaattgacaattgaagaatttgttgagcctcaaaagggagaaaaatttaattaatta 11791576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 26199273 - 26199187
Alignment:
Q  346 tcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaa-tttaataaattccatttt 431  Q
    |||||||||| ||| |||||||  |||| ||| ||| || ||||||||||||||| ||||||||| || ||||||||||||||||||    
T  26199273 tcctttgtatattgctactttacgactcctagtctagcattccttgtgcttgttaggattcattgtaattttaataaattccatttt 26199187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 313 - 438
Target Start/End: Original strand, 11699013 - 11699137
Alignment:
Q  313 tgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgca 412  Q
    |||||||||||| |||| ||||||||| ||| ||||||||| ||||| |||| ||| |||| || |||| || ||||||||   ||||||||||||||      
T  11699013 tgtatgggttttctatttggggcttct-atc-atcctttgtttgttgctactataagactcttaacctagcactccttgtggcggttaagattcattgtt 11699110  T
Q  413 at-ttaataaattccattttagctttt 438  Q
    || || |||||||||||||||| ||||    
T  11699111 atcttcataaattccattttagttttt 11699137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 439
Target Start/End: Complemental strand, 3301953 - 3301737
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgta-atgaggtcttttctataagttttttggatttatt--ctttgaagcatggatgtatgggtttt 324  Q
    |||||||||||||||||||| |||||| |  |||||  | ||||  ||| || ||||||||| |||||| ||  ||||||  ||  | ||||||||||||    
T  3301953 tgtttctatttattgattttagagatagccatttgtttaggaggcgtttcctctaagtttttaggattttttttctttgattcacaggtgtatgggtttt 3301854  T
Q  325 ttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgtt-aagattcattgc-aatttaataaa 422  Q
      ||| || ||| | |||||||| ||| ||||||| |||||||| |||  || | ||| | |||||||||| ||| |||||||||||| | |||||||||    
T  3301853 ccattaggagctccccatctatcatttatatgttgctactttaagacttctaccttaatactccttgtgctggttaaagattcattgcgattttaataaa 3301754  T
Q  423 ttccattttagctttta 439  Q
    || ||||||| ||||||    
T  3301753 tttcattttaactttta 3301737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 228 - 438
Target Start/End: Complemental strand, 250798 - 250579
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttatt--ctttgaagcatggatgtatgggttttt 325  Q
    |||||||||||| |||||| ||||||| | |||||| | ||||  ||| ||||| | ||||||||||| ||  ||||||  || || |||||| | |||     
T  250798 tgtttctatttactgatttcggagatagccctttgttaggaggcgtttcctatagggtttttggattttttttctttgattcacgggtgtatgaggtttc 250699  T
Q  326 tattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgctt------gttaagattcattgc-aatttaa 418  Q
     |||||||||| | |||||||| ||||||||||| || ||||| |||| || |||| || |||||||||||      ||||||||||||||| | |||||    
T  250698 cattgggggctccccatctatcatttgtatgttgctattttaagactcctaacctagcactccttgtgcttgtgctggttaagattcattgcgattttaa 250599  T
Q  419 taaattccattttagctttt 438  Q
    || |||| ||||||||||||    
T  250598 tacattctattttagctttt 250579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 233 - 416
Target Start/End: Original strand, 34213987 - 34214171
Alignment:
Q  233 ctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggatttattctttgaagcatggatgtatgggttttttattggg 332  Q
    |||||||||| ||| |||||||   |||||| | ||||  ||||||||| ||||||| ||||| ||||||||  ||  | |||||| |||||  |||||     
T  34213987 ctatttattgttttcggagatagtcctttgttaggaggcattttctataggtttttttgattttttctttgattcacaggtgtatgagttttccattgga 34214086  T
Q  333 ggcttctcatctatcctttgtatgttg-ttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaattt 416  Q
    |||| ||||  |||||||||||||||| ||||||||| |||||| | ||| || || ||||||| | ||||||||||||| ||||    
T  34214087 ggctcctcacatatcctttgtatgttgtttactttaagactcatggtctagcactctttgtgctggctaagattcattgcgattt 34214171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 21880850 - 21880758
Alignment:
Q  340 catctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc-aatttaataaattccatttta 432  Q
    |||| ||||||||||||||||| |||||| | || ||||||| || |||||||||| ||||||||||||||| | ||||||||||| |||||||    
T  21880850 catccatcctttgtatgttgtt-ctttaagattcctagcctagcactccttgtgctggttaagattcattgcgattttaataaatttcatttta 21880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 1869377 - 1869250
Alignment:
Q  310 ggatgtatgggttttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcatt 409  Q
    ||||||||| |||||  ||||||| |||| |||| ||||||||| ||||| || | ||| ||||  ||||||  | |||||||||| |||||||||||||    
T  1869377 ggatgtatgagttttacattgggg-cttcccatc-atcctttgtttgttgctaatgtaagactccgagcctagtattccttgtgctggttaagattcatt 1869280  T
Q  410 gcaat-ttaataaattccattttagctttt 438  Q
    |  || ||||||||||||||||||||||||    
T  1869279 gttatcttaataaattccattttagctttt 1869250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 322 - 411
Target Start/End: Complemental strand, 20740039 - 20739951
Alignment:
Q  322 tttttattgggggcttctcatctatcctttgtatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgc 411  Q
    |||| |||||||||||| || | ||||||||| ||||| |||| ||| |||| |||| ||||| |||||||||| |||||||||||||||    
T  20740039 ttttcattgggggcttc-caaccatcctttgtttgttgctactgtaagactcctagcttaacactccttgtgctggttaagattcattgc 20739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3524153 - 3524220
Alignment:
Q  228 tgtttctatttattgattttggagataactctttgtaatgaggtcttttctataagttttttggattt 295  Q
    ||||||||||||||||||||||||||| | |||||| | ||||  ||| |||||  ||||||||||||    
T  3524153 tgtttctatttattgattttggagatagccctttgttaagaggcgtttcctatagattttttggattt 3524220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 24046002 - 24046085
Alignment:
Q  353 tatgttgttactttaaaactcatagcctaacagtccttgtgcttgttaagattcattgcaatttaataaattccattttagctt 436  Q
    ||||||| |||||||  |||||||  |||||| |||||||||| || | |||||||||  |||||||||||| |||||| ||||    
T  24046002 tatgttgctactttacgactcatattctaacattccttgtgctggtcaggattcattgtgatttaataaatttcattttggctt 24046085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 10807 - 10862
Alignment:
Q  9 attgagagaaagaaattgggaactgaagaatttgttgagcctcaaaggggagaaaa 64  Q
    ||||||||||||||||||| || |||||||||| |||||||||||| |||| ||||    
T  10807 attgagagaaagaaattggcaattgaagaatttattgagcctcaaaagggaaaaaa 10862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University