View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_high_9 (Length: 339)
Name: NF11628_high_9
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 36872529 - 36872209
Alignment:
| Q |
1 |
aggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgtagtccaaactgaggtgaaagatatggattgggaaagcaccttcc |
100 |
Q |
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| T |
36872529 |
aggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaaagcaccttcc |
36872430 |
T |
|
| Q |
101 |
atgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaacattaatatgacatatataacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
36872429 |
atgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaatattaataggacatatataacaca |
36872330 |
T |
|
| Q |
201 |
ttgcataacataatattattttgtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatggaaactgtggta |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36872329 |
ttgcataacataatatttttttgtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatggaaactgtggta |
36872230 |
T |
|
| Q |
301 |
caggaaagtaatgaaggaatt |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36872229 |
caggaaagtaatgaaggaatt |
36872209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 37628963 - 37629066
Alignment:
| Q |
61 |
caaactgaggtgaaagatatggattgggaaagcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaataca |
160 |
Q |
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||||||||||| ||||| ||||| ||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
37628963 |
caaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacatttcagagatccctgatctcagtgatgaataca |
37629062 |
T |
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| Q |
161 |
ggtt |
164 |
Q |
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|||| |
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| T |
37629063 |
ggtt |
37629066 |
T |
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