View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11628_low_11 (Length: 314)

Name: NF11628_low_11
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11628_low_11
NF11628_low_11
[»] chr6 (4 HSPs)
chr6 (1-295)||(22506095-22506396)
chr6 (19-149)||(22501147-22501279)
chr6 (172-226)||(21882116-21882170)
chr6 (206-264)||(30777199-30777257)
[»] chr3 (3 HSPs)
chr3 (168-274)||(10877115-10877221)
chr3 (166-261)||(3195324-3195419)
chr3 (212-275)||(34964186-34964249)
[»] chr1 (2 HSPs)
chr1 (183-287)||(27126379-27126483)
chr1 (230-276)||(51103025-51103071)
[»] chr2 (3 HSPs)
chr2 (79-149)||(22983454-22983526)
chr2 (175-287)||(23767387-23767499)
chr2 (175-262)||(23796557-23796644)
[»] chr8 (2 HSPs)
chr8 (168-252)||(3683659-3683743)
chr8 (168-210)||(1908213-1908255)
[»] chr4 (2 HSPs)
chr4 (192-286)||(56576421-56576514)
chr4 (168-287)||(4299384-4299504)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 22506095 - 22506396
Alignment:
Q  1 gtataaactgaatagtagaaaaattaaatcataattgatgcaaaaggatcagagatagatttgaaagaaagacatcttaaatctaatgatctttctctta 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22506095 gtatagactgaatagtagaaaaactaaatcataattgatgcaaaaggatcagagatagatttcaaagaaagacatcttaaatctaatgatctttctctta 22506194  T
Q  101 aaaggtgagaacttcttgatggagaagtatcagttagttaaacacttgatgagtactatctaca-------tttaagtggttaatgaacttcaccaacga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  22506195 aaaggtgagaacttcttgatggagaagtatcagttagttaaacacttgatgagtactatctacatttaagttttaagtggttaatgaacttcaccaacga 22506294  T
Q  194 tgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactgccgaactccgggttactagggaccctt 293  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22506295 tgaattgtttgggagaagccgagttcgattcctagttggaacaattattggccagactatccttacctcactgccgaactccgggttactagggaccctt 22506394  T
Q  294 tc 295  Q
    ||    
T  22506395 tc 22506396  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 22501147 - 22501279
Alignment:
Q  19 aaaaattaaatcataattgatgcaaaaggatcagagatagatttgaaagaaagacatcttaaatctaatgatctttctcttaaaaggtgaga--acttct 116  Q
    ||||| |||||||||||||||||| |||||||  ||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||  | ||||    
T  22501147 aaaaactaaatcataattgatgcagaaggatctaagatagattggacagaaaggcatcttaaatctaatgatctttctcttaaaacgtgagaagatttct 22501246  T
Q  117 tgatggagaagtatcagttagttaaacacttga 149  Q
    ||||| | |||||||||||||||||||||||||    
T  22501247 tgatgcaaaagtatcagttagttaaacacttga 22501279  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 21882170 - 21882116
Alignment:
Q  172 ggttaatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcct 226  Q
    ||||||||||||||||  | |||||||||||||| ||||||||||||||| ||||    
T  21882170 ggttaatgaacttcacagatgatgaattgtttgaaagaagccgagttcgactcct 21882116  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 30777257 - 30777199
Alignment:
Q  206 gagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcac 264  Q
    ||||| ||||||||||||||||| ||||| ||||  | || ||||||||||||||||||    
T  30777257 gagaacccgagttcgattcctagctggaataattcgtggctagactatccttacctcac 30777199  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 10877115 - 10877221
Alignment:
Q  168 aagtggttaatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactgc 267  Q
    ||||||||||||| ||||||| | || |||| ||||| ||||| | ||||||||||||||  | |||||||| || ||||||||||||||||||||  ||    
T  10877115 aagtggttaatgagcttcaccgaggacgaatcgtttgggagaacctgagttcgattcctatgtagaacaattcttggccagactatccttacctcatggc 10877214  T
Q  268 cgaactc 274  Q
    |||||||    
T  10877215 cgaactc 10877221  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 3195324 - 3195419
Alignment:
Q  166 ttaagtggttaatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacct 261  Q
    ||||||||||||||| ||||||||| ||||||| | | | ||||| | ||||||  ||||||| |||||||||| ||  | |||||||||||||||    
T  3195324 ttaagtggttaatgagcttcaccaaggatgaatcgctcgggagaaactgagttcatttcctaggtggaacaattcttgacgagactatccttacct 3195419  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 34964186 - 34964249
Alignment:
Q  212 ccgagttcgattcctagttggaacaattattagccagactatccttacctcactgccgaactcc 275  Q
    |||||||||||||||| | ||||||||||||  ||||||| | |||||||| | ||||||||||    
T  34964186 ccgagttcgattcctaatgggaacaattattgaccagactttacttacctcccagccgaactcc 34964249  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 27126483 - 27126379
Alignment:
Q  183 ttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactgccgaactccgggttac 282  Q
    |||||||| ||  ||| ||||||||||| || | |||||||| ||| |||||||||| || |||||| ||||||||||||||  ||||||||||  ||||    
T  27126483 ttcaccaaggactaatcgtttgagagaacccaaattcgattcttagatggaacaatttttggccagattatccttacctcacgaccgaactccgaattac 27126384  T
Q  283 taggg 287  Q
    |||||    
T  27126383 taggg 27126379  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 51103025 - 51103071
Alignment:
Q  230 tggaacaattattagccagactatccttacctcactgccgaactccg 276  Q
    |||||||||| ||||||||||||| |||||||||| ||| |||||||    
T  51103025 tggaacaattcttagccagactatacttacctcacagccaaactccg 51103071  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 22983454 - 22983526
Alignment:
Q  79 aaatctaatgatctttctcttaaaaggtgagaac--ttcttgatggagaagtatcagttagttaaacacttga 149  Q
    |||||| |||||||||||||| ||| |||||||   ||||||||||| ||| |||| ||||||||||||||||    
T  22983454 aaatctcatgatctttctcttgaaaagtgagaaaatttcttgatggaaaaggatcatttagttaaacacttga 22983526  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 23767387 - 23767499
Alignment:
Q  175 taatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactgccgaactc 274  Q
    |||||| ||||||||| |||||||  || ||||||| ||| ||||||||| ||| | |||||||| || | ||| ||||||||||||| | |  ||||||    
T  23767387 taatgagcttcaccaatgatgaatcattcgagagaacccgggttcgattcttaggtagaacaattcttcgtcaggctatccttacctcgcggatgaactc 23767486  T
Q  275 cgggttactaggg 287  Q
    ||| |||| ||||    
T  23767487 cggattaccaggg 23767499  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 23796557 - 23796644
Alignment:
Q  175 taatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctc 262  Q
    |||||| ||||||||| |||||||  || ||||||| || |||||||||| ||| | |||||||| || | ||| |||||||||||||    
T  23796557 taatgagcttcaccaatgatgaatcattcgagagaatccaagttcgattcttaggtagaacaattcttcgtcaggctatccttacctc 23796644  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 3683659 - 3683743
Alignment:
Q  168 aagtggttaatgaacttcaccaacgatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagacta 252  Q
    |||||||||||||||||||||||  |||||||||||  |||||   ||| ||||||||| | ||||| || ||||||||| ||||    
T  3683659 aagtggttaatgaacttcaccaaaaatgaattgtttcggagaacttgagatcgattccttgatggaataactattagccaaacta 3683743  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 1908255 - 1908213
Alignment:
Q  168 aagtggttaatgaacttcaccaacgatgaattgtttgagagaa 210  Q
    |||||||||| |||||||| ||| |||||||||||||||||||    
T  1908255 aagtggttaacgaacttcatcaatgatgaattgtttgagagaa 1908213  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 56576421 - 56576514
Alignment:
Q  192 gatgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactgccgaactccgggttactagg 286  Q
    ||||||| ||| ||||||| ||||||| ||| ||| || |||| |||| | ||||| ||| | |||||||| | |||||||||||||||||||||    
T  56576421 gatgaatcgttcgagagaacccgagtttgatacctggtgggaataattct-agccaaactttacttacctcccggccgaactccgggttactagg 56576514  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 4299384 - 4299504
Alignment:
Q  168 aagtggttaatgaacttcaccaacg-atgaattgtttgagagaagccgagttcgattcctagttggaacaattattagccagactatccttacctcactg 266  Q
    ||||||||||||| ||||||||| | | |||| | | | |||||  |||||||||||||| | || ||||||| |||||||| || | |||||||| | |    
T  4299384 aagtggttaatgagcttcaccaaaggacgaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagccaggctttacttacctcgcgg 4299483  T
Q  267 ccgaactccgggttactaggg 287  Q
    | |||| |||| |||||||||    
T  4299484 ctgaacaccggattactaggg 4299504  T

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