View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11628_low_16 (Length: 254)

Name: NF11628_low_16
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11628_low_16
NF11628_low_16
[»] chr3 (1 HSPs)
chr3 (7-245)||(26279144-26279384)
[»] chr5 (2 HSPs)
chr5 (121-245)||(2024899-2025024)
chr5 (178-242)||(34425680-34425744)
[»] chr2 (5 HSPs)
chr2 (117-245)||(11952868-11953001)
chr2 (112-242)||(21665965-21666093)
chr2 (117-210)||(29694095-29694188)
chr2 (109-162)||(37182376-37182429)
chr2 (189-245)||(38400584-38400638)
[»] chr6 (2 HSPs)
chr6 (177-245)||(2477845-2477910)
chr6 (109-169)||(20611507-20611567)
[»] chr4 (3 HSPs)
chr4 (190-241)||(4168129-4168180)
chr4 (177-245)||(27111813-27111877)
chr4 (179-244)||(40217007-40217073)
[»] chr7 (2 HSPs)
chr7 (108-164)||(7398158-7398214)
chr7 (127-164)||(5955253-5955290)
[»] scaffold1320 (1 HSPs)
scaffold1320 (179-245)||(1131-1197)
[»] scaffold0007 (1 HSPs)
scaffold0007 (123-169)||(232550-232596)
[»] chr8 (2 HSPs)
chr8 (179-245)||(15078535-15078601)
chr8 (179-245)||(15167675-15167741)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 26279144 - 26279384
Alignment:
Q  7 gtttcttggttaattatttgaggcaannnnnnnaatatttttggaaagaagtctcatatatatgaagaaaatgaatgatcatccttataacatttatatc 106  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  26279144 gtttcttggttaattatttgaggcaatttttttaatatttttggaaagaagtctcatatatctgaagaaaatgaatgatcatccttagaacatttatatc 26279243  T
Q  107 cag-gtcggatcttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtct-nnnnnnngttatagctcggtagtactactaagtac 204  Q
    ||| |||||  ||| || ||||||||||| ||| ||||||||||||||| || |||||||||||         ||||||||| ||||||||||||| |||    
T  26279244 cagtgtcgggccttagggtgtgcaaggagctcactggagctgggcctccccagggtatgagtctaaaaaaaaattatagctcagtagtactactaaatac 26279343  T
Q  205 tactccattaaacacaaaaatccttattctctttctctctg 245  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  26279344 tactccactaaacacaaaattccttattctctttctctctg 26279384  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 2025024 - 2024899
Alignment:
Q  121 ggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtctnnnnnnngttatagctcggtagtactactaagtactactccattaaacaca 220  Q
    |||||||||||||| ||||| || ||| |||||| ||||||||| ||||        ||||||| | |||||||||||||||||||| ||| |||| |||    
T  2025024 ggatgtgcaaggagctcaatagaactgcgcctccccaaggtatgggtctaaaaaaaattatagcccagtagtactactaagtactaccccactaaaaaca 2024925  T
Q  221 aaaa-tccttattctctttctctctg 245  Q
    |||| |||||||||||||||||||||    
T  2024924 aaaattccttattctctttctctctg 2024899  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 34425680 - 34425744
Alignment:
Q  178 ttatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctct 242  Q
    ||||||| | |||||| ||||||||||||| ||| |||| |||||| |||| || ||||||||||    
T  34425680 ttatagcccagtagtattactaagtactaccccactaaaaacaaaattcctcatcctctttctct 34425744  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 11953001 - 11952868
Alignment:
Q  117 cttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtctnnnnnnng----ttatagctcggtagtactactaagtactactccat 212  Q
    |||||| ||||||||||| |||||||| |||||||||| ||||||||||| ||            ||||||| | ||||||||||||||||||||||||     
T  11953001 cttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgagcctcaaaaataaaatttatagccctgtagtactactaagtactactccac 11952902  T
Q  213 taaacacaaaaa-tccttattctctttctctctg 245  Q
    |||| ||||||| || ||||||||||||||||||    
T  11952901 taaaaacaaaaattctttattctctttctctctg 11952868  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 21666093 - 21665965
Alignment:
Q  112 cggatcttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtctnnnnnnngttatagctcggtagtactactaagtactactcca 211  Q
    |||| |||||| ||||||||||| |||||||| |||||||||| ||||||||| | ||        ||||||||| | |||||||||||| ||||| |||    
T  21666093 cggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgggcctaaatttttttatagctcagcagtactactaagcactacccca 21665994  T
Q  212 ttaaacacaaaaatccttattctctttctct 242  Q
     |||  | |||| ||||||||||||||||||    
T  21665993 ctaa--aaaaaattccttattctctttctct 21665965  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 29694095 - 29694188
Alignment:
Q  117 cttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtctnnnnnnngttatagctcggtagtactactaagtactactcc 210  Q
    |||||| ||||||| ||| |||||||||||||||||||| |||||||| ||||        ||||||| |  ||||||||||||||||||||||    
T  29694095 cttggggtgtgcaaagagctcaatggagctgggcctccttaaggtatgggtctaaaaaaaattatagcccactagtactactaagtactactcc 29694188  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 37182376 - 37182429
Alignment:
Q  109 ggtcggatcttgggatgtgcaaggagttcaatggagctgggcctcctcaaggta 162  Q
    ||||||| |||||| ||||||| ||| ||||||||||||| ||||| |||||||    
T  37182376 ggtcggaccttggggtgtgcaaagagctcaatggagctggacctccccaaggta 37182429  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 38400584 - 38400638
Alignment:
Q  189 tagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    ||||||||||||||||||| ||| |||  |||||| |||||||||||||||| ||||    
T  38400584 tagtactactaagtactaccccactaa--acaaaattccttattctctttctttctg 38400638  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 2477910 - 2477845
Alignment:
Q  177 gttatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    |||||||| | |||||||||||||||||||| ||||||||   ||||||||||||||||||| ||||||    
T  2477910 gttatagcccagtagtactactaagtactaccccattaaa---aaaaatccttattctctttatctctg 2477845  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 20611507 - 20611567
Alignment:
Q  109 ggtcggatcttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtct 169  Q
    ||||||| |||||| ||||||| ||| |||||||||||||||||||  |||||||| ||||    
T  20611507 ggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgggtct 20611567  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 4168180 - 4168129
Alignment:
Q  190 agtactactaagtactactccattaaacacaaaaatccttattctctttctc 241  Q
    |||||||||||||||||| |||||||| | |||||||| |||||||||||||    
T  4168180 agtactactaagtactaccccattaaaaaaaaaaatccatattctctttctc 4168129  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 27111813 - 27111877
Alignment:
Q  177 gttatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    |||||||| | |||||||||||||||||||| |||||||    ||||||||||||||||||| ||||||    
T  27111813 gttatagcccagtagtactactaagtactaccccattaa----aaaaatccttattctctttatctctg 27111877  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 40217007 - 40217073
Alignment:
Q  179 tatagctcggtagtactactaagtactactccattaaacacaaaaa-tccttattctctttctctct 244  Q
    |||||||  ||||||||||||| |||||| ||| |||| ||||||| | ||||||||||||||||||    
T  40217007 tatagcttagtagtactactaaatactaccccactaaaaacaaaaatttcttattctctttctctct 40217073  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 7398158 - 7398214
Alignment:
Q  108 aggtcggatcttgggatgtgcaaggagttcaatggagctgggcctcctcaaggtatg 164  Q
    |||||||| |||||| ||||||| ||| |||||||||||| |||||| |||||||||    
T  7398158 aggtcggaccttggggtgtgcaacgagctcaatggagctgagcctccccaaggtatg 7398214  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 5955253 - 5955290
Alignment:
Q  127 gcaaggagttcaatggagctgggcctcctcaaggtatg 164  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  5955253 gcaaggagcacaatggagctgggcctcctcaaggtatg 5955290  T

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Target: scaffold1320 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 1131 - 1197
Alignment:
Q  179 tatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    |||||||| || ||||||||||||||||| ||| |||| | |||| |||||||| | ||||||||||    
T  1131 tatagctcagtggtactactaagtactaccccactaaataaaaaattccttattatttttctctctg 1197  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 232596 - 232550
Alignment:
Q  123 atgtgcaaggagttcaatggagctgggcctcctcaaggtatgagtct 169  Q
    ||||||||||||||||||||| | ||||||||  |||||||||||||    
T  232596 atgtgcaaggagttcaatggaaccgggcctccctaaggtatgagtct 232550  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 15078535 - 15078601
Alignment:
Q  179 tatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    |||||||| || ||||||||||||||||| ||| |||| | |||| |||||||| | ||||||||||    
T  15078535 tatagctcagtggtactactaagtactaccccactaaataaaaaattccttattatttttctctctg 15078601  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 15167741 - 15167675
Alignment:
Q  179 tatagctcggtagtactactaagtactactccattaaacacaaaaatccttattctctttctctctg 245  Q
    |||||||| |||||||||||||||||| | ||| |||| | |||| |||||||| | ||||||||||    
T  15167741 tatagctcagtagtactactaagtacttccccactaaataaaaaattccttattatttttctctctg 15167675  T

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