View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_low_2 (Length: 925)
Name: NF11628_low_2
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 290 - 728
Target Start/End: Complemental strand, 1541758 - 1541327
Alignment:
| Q |
290 |
ttggattcagaacctagaagtcatggtcatttgaggtttgctacgtataactgaagtaaaacatatacatagtgatttcttttttcactcctaacatgta |
389 |
Q |
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| T |
1541758 |
ttggattcagaacctagaagtcatggtcatttgaggtttgctacgtataactgaagtaaaacatatacatagtgatttcttttttcaatcctaacatgta |
1541659 |
T |
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| Q |
390 |
tccaaattaaaagacaattttttccatgcagaagtatgattctgaacacatatgtatagtttctttggaagcaatggccggaataaagaaggtccttata |
489 |
Q |
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| T |
1541658 |
tccaaattaaaagacaattttttacgtgcagaagtatgattctgaacacat--gtatagtttc-------------------ataaagaaggtctttgta |
1541580 |
T |
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| Q |
490 |
gataccatccattaaagggtttaaaaacatgaagttagctatatgatttgaacaaaattcataaaacaaaagaggggagcta-------------tgttc |
576 |
Q |
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| T |
1541579 |
gataccattcattaaagggtttaaaaacatgaagttagctatatgatttgaacaaaattcataaaacaaaagaggggagctaaaaaaatgagctatgttc |
1541480 |
T |
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| Q |
577 |
ttccgttgatgattgagatgagataacatgctgggtaggaatacgataccgtaaggcggtgtttgtttcatgg-ctgtaaaaattattcagtagaatata |
675 |
Q |
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| T |
1541479 |
ttccgttgatgattgagatgagataacatgctgggtagcaatacgatacagtaaggcggtgtttgtttcatggtttgtaaaaattattcactagaatata |
1541380 |
T |
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| Q |
676 |
gaagttacaaatataggttccacctagctatcgtaaaaaggtgtacatgtact |
728 |
Q |
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| T |
1541379 |
gaagttacaaatataggttccacctagctatcgtaaaaaggtgtacatgtact |
1541327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 1542077 - 1541825
Alignment:
| Q |
16 |
cacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaatgaacttaccacctattttgggattattactgtatataatggaatgg |
115 |
Q |
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| T |
1542077 |
cacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaatgaacttcccacctattttgggattattactgtatataatggaatgg |
1541978 |
T |
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| Q |
116 |
aatgttatggcaatccactgtttgaaaattaaaaagtaaataatagaatggaatggaaagtgatgacattcattccaccacaaccattgtttattctcat |
215 |
Q |
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| T |
1541977 |
aatgttatggcaatccactgtttgaaaattaaaaagtaaataatagaatggaatggaaagtgatgacattcattccaccacaaccattgtttattctcat |
1541878 |
T |
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| Q |
216 |
ttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
268 |
Q |
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| T |
1541877 |
ttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
1541825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 822 - 925
Target Start/End: Complemental strand, 1541242 - 1541143
Alignment:
| Q |
822 |
atatacaaacgtgagtagtgtgtgaaatttggaatagtaagtaagatgcgtacactctctctctagagtttcctatttggtgaatactaacgtaagatgc |
921 |
Q |
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| T |
1541242 |
atatacaaacgtgagtagtgtgtgaaatttggaatagtaagtaagatgcgtacact----ctctagagtttcctatttggtgaatactaacataagatgc |
1541147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 726 - 789
Target Start/End: Complemental strand, 1541303 - 1541240
Alignment:
| Q |
726 |
actccataaagaatgaaaacttgtgttggaaagcaacatgaaactaaccatgttcacattgata |
789 |
Q |
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| T |
1541303 |
actccataaagaatgaaaacttgtgttggaaagcaacatgaaactaaccatgttcacattgata |
1541240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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