View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_low_4 (Length: 607)
Name: NF11628_low_4
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 845417 - 846006
Alignment:
| Q |
1 |
ctcacatagcccgccttcaaagatttgtgatctgtatcatcatcataatcaggtagggcacctcttacctacaaaagtttgaagnnnnnnnnn-caacat |
99 |
Q |
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| T |
845417 |
ctcacatagcccgccttcaaagatttgtgatctgtatcatcatcataatcaggtagggcacctcttacctacaaaagtttgaagaaaaaaaaaacaacat |
845516 |
T |
|
| Q |
100 |
tattattcaatggggaaagaggatgcgaggaagattacaaaatgtccatccaagtaagtgttttagttcttccatataacttagcatctatttcagaagt |
199 |
Q |
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| T |
845517 |
tattattcaatggggaaagaggatgcgaggaagattacaaaatgtccatccaagtaagtgttttagttcttccatataacttagcatctatttcagaagt |
845616 |
T |
|
| Q |
200 |
tgataaaatcaaatacttacaatcttcactctcctctgtttataataagtccaataacagcacagtcaagcacaatattaagctgtgtagaacttataac |
299 |
Q |
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| T |
845617 |
tgataaaatcaaatacttacaatcttcactctcctctgtttataataagtccaataacagcacagtcaagcacaatattaagctgtgtagaacttataac |
845716 |
T |
|
| Q |
300 |
aatcgaaggagtaaatccgaaagtattagacaatatgcttcatacaaatgaaatatcgagactttaagtcaattagaaagaaagtaaatgagcctacctc |
399 |
Q |
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| T |
845717 |
aatcgaaggagtaaatccgaaagtattagacaatatgcttcatacaaatgaaatatcgagactttaagtcaattagaaagaaagtaaatgagcctacctc |
845816 |
T |
|
| Q |
400 |
tctcgcaaataaaagatgttcaggtgatgcagatgacgtgccaannnnnnnaggcatatctgtatttgtgttggtcatatcagacgacattcttcgtcct |
499 |
Q |
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| T |
845817 |
tctcgcaaataaaagatgttcaggtgatgcagatgacgtgccaatttttttaggcatatctgtatttgtgttggtcatatcagacaacattcttcgtcct |
845916 |
T |
|
| Q |
500 |
tctgtctcagaggtaacttgcctccatcccatcttaaagatacttttaccctgcctcgttagcttgtaaccctttttcagatgcacagac |
589 |
Q |
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| T |
845917 |
tctgtctcagaggtaactttcctccatcccatcttaaagatacttttaccctgcctcgttagcttgtaaccctttttcagatgcacagac |
846006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 392 - 577
Target Start/End: Original strand, 851819 - 852004
Alignment:
| Q |
392 |
cctacctctctcgcaaataaaagatgttcaggtgatgcagatgacgtgccaannnnnnnaggcatatctgtatttgtgttggtcatatcagacgacattc |
491 |
Q |
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| T |
851819 |
cctacctccctcgcaaataaaagatgttcaggtgatgcagatgatgtgccataatttttaggtgtatgaatatcagtattggtcatatcagatgacatta |
851918 |
T |
|
| Q |
492 |
ttcgtccttctgtctcagaggtaacttgcctccatcccatcttaaagatacttttaccctgcctcgttagcttgtaaccctttttc |
577 |
Q |
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| T |
851919 |
ttggtccttctgtctgagaggtgacttgcttccatccaatcttaaagatacttttaccctgccttgttagcttgtaaccctttttc |
852004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 575
Target Start/End: Complemental strand, 47055432 - 47055327
Alignment:
| Q |
470 |
ttggtcatatcagacgacattcttcgtccttctgtctcagaggtaacttgcctccatcccatcttaaagatacttttaccctgcctcgttagcttgtaac |
569 |
Q |
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||||||||||| || ||||| |||||||||| ||||||||||| | |||| ||||||||||||| | | ||| ||||||||| | |||||| |||| | |
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| T |
47055432 |
ttggtcatatctgataacatttttcgtccttccgtctcagaggtgatttgcttccatcccatcttgattaaactcttaccctgcttagttagcatgtacc |
47055333 |
T |
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| Q |
570 |
cctttt |
575 |
Q |
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|||||| |
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| T |
47055332 |
cctttt |
47055327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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