View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11628_low_5 (Length: 528)
Name: NF11628_low_5
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 42229711 - 42230085
Alignment:
| Q |
19 |
acaccagacacatactaactattatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatagaggatggaggctgaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229711 |
acaccagacacatactaactataatacatttgctatgcattatgaataggttggcttgcaagcagatacacataggaggacatagaggatggaggctgaa |
42229810 |
T |
|
| Q |
119 |
gatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacgcatgcaggactgtacaatagcagatatggtccaggttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42229811 |
gatggtcgaggcatttataatcatactaacattcacacaattgttgtgcttattgctgacccatgcaggactgtacaatagcagatatggtccaggttat |
42229910 |
T |
|
| Q |
219 |
cgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcacacgtgtttaaataaacatcattatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
42229911 |
cgtgacactgactatggtgttggaggaggagctactggagatccaatgcacaagggtggtcctgttggtggcactcgtgtttaaataaatatcattatcc |
42230010 |
T |
|
| Q |
319 |
atataactacactttgtttcttg-tttttaataatattgtagtctcctagtttgggacacgggactatgttcctg |
392 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42230011 |
atataactacactttgtttcttgttttttaataatattgtagtttcctagtttgggacacgggactatgttcctg |
42230085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 420 - 521
Target Start/End: Original strand, 42230113 - 42230214
Alignment:
| Q |
420 |
gggtttgttgtatgaagagtgtcactttgtagcattacgttgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42230113 |
gggtttgttgtatgaagagtgtcactttgtagcattacattgtgtataccaatggctgcaattaatcatgtatttgcaatttgcttatttctgttcttct |
42230212 |
T |
|
| Q |
520 |
ct |
521 |
Q |
| |
|
|| |
|
|
| T |
42230213 |
ct |
42230214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University