View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_low_6 (Length: 505)
Name: NF11628_low_6
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Complemental strand, 5051144 - 5050671
Alignment:
| Q |
17 |
cacatgaagggattttgtattttatagggatgactagtgttctcatgtatgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtga |
116 |
Q |
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| T |
5051144 |
cacatgaagggattttgtattttatagggatgactagtgttctcatgtatgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtga |
5051045 |
T |
|
| Q |
117 |
tagacatgcaaataacatctttttaatggtcatgttggtgtgagttgtgggaaaatttgaatggc-tgtttttgtactctttgaagttatgtgaaggtga |
215 |
Q |
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| T |
5051044 |
tagatatgcaaataacatctttttaatggtcatgttggtgtgagttgtgggaaaatttgaatggcttgtttttatactattcgaagttatgtgaaggtga |
5050945 |
T |
|
| Q |
216 |
tgttgtgttcttgcaaagtgctcatggaatatttgttggaggcttgaagattgataagattgattgtgttggtcattggattcatggtttcaattgttgt |
315 |
Q |
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| T |
5050944 |
tgttgtgttcgtgcaacgtgctcatggaatatttgttggaggcttg---------aagattgattgtgttggtcattggattcatggtttcaattgttgt |
5050854 |
T |
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| Q |
316 |
aaatgattttttgatattccattgtggcctattccaatccatccataacatagcataagatcgttatgtagaattgttaacaaaatttgtgtgg---gta |
412 |
Q |
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| T |
5050853 |
aaatgattttttgatattccattgtggcctattccaatccatccataacatagcataacatccttatgtagaattgttaacaaaatttgtgtgggtagta |
5050754 |
T |
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| Q |
413 |
gcatattagcactggtataagtcccacatcggggagaatagctaaagctgtgtgggaaagtggttataaaatgaaagcctatg |
495 |
Q |
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| T |
5050753 |
gcatattagcactggtataagtcccacatcggggagaatagctgaagctgtgtgggaaagtggttataaaatgaaagcctatg |
5050671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 51274310 - 51274498
Alignment:
| Q |
28 |
attttgtattttatagggatgactagtgttctcatgtatgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtgatagacatgcaa |
127 |
Q |
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| T |
51274310 |
attttgtatttcatgggaaaaactagtattctagtgtatgaccctttcaacaatgatgaaaaatgtgaaatcattaattttcctagtgatgcatcagcaa |
51274409 |
T |
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| Q |
128 |
ataaca-tctttttaatggtcatgttggtgtgagttgtgggaaaatttgaatggc-tgtttttgtactctttgaagttatgtgaaggtg |
214 |
Q |
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| T |
51274410 |
atgatattctatttaatggtcatgttggtgtgtgtcgtggaaaatttcgaatggcttgtttttgtactcttcgatgctttgtgaaggtg |
51274498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 373
Target Start/End: Original strand, 51274658 - 51274824
Alignment:
| Q |
211 |
ggtgatgttgtgttcttgcaaagtgctcatggaatatttgttggaggcttgaagattgataagattgattgtgttggtcattggattcat-ggtttcaat |
309 |
Q |
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| T |
51274658 |
ggtgatgttgtgttcttacaacgtgctcatagaatttttgttggaaacttgaagactaacgagattgagggtgttggttatgggattcatgggtttcaat |
51274757 |
T |
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| Q |
310 |
tgttgtaaatgattt--tttgatattccattgtggcctattccaa-tccatccataacatagcataa |
373 |
Q |
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| T |
51274758 |
cgttgcaaatgatttcacttgatcttccattgtggccaactccaattccatccataccatagcataa |
51274824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 38783334 - 38783390
Alignment:
| Q |
62 |
tgtatgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtgata |
118 |
Q |
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| T |
38783334 |
tgtatgaccctttcaacaatgttgaaaaatgtgacctcattaattttccaagtgata |
38783390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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