View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11628_low_8 (Length: 410)
Name: NF11628_low_8
Description: NF11628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11628_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 23924459 - 23924850
Alignment:
| Q |
20 |
aattagtcatacgtataagtctacaattctggccttttagtagcattttattttgactcaatagcaatgaatatcttagaattctagaactcaagaaagg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23924459 |
aattagtcatacgtataagtctacaattctggccttttagtagcattttattttgactcaatagcaatgaatatcttagaattctaaaactcaagaaagg |
23924558 |
T |
|
| Q |
120 |
agtaaaaagcatgaaatagctagaatagtactaggacatacatgttgatgtccatgaagtgcttggctgccaaagtagctactcatagagtacaaataaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23924559 |
agtaaaaagcatgaaatagctagaatagtactaggacatacatgttgatgtccatgaagtgcttggctgccaaagtagctactcatagagtacaaataaa |
23924658 |
T |
|
| Q |
220 |
tcaaaatcattcttctcaaatagtaaaag---------------cctccaagcaacaaccaacatggaacaaactaagatatacccttctttaatattgt |
304 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23924659 |
tcaaaatcattcttctcaaatagtaaaagcaaaactagataactcctccaagcaacaaccaacatggaacaaactaagatatacccttctttaatattgt |
23924758 |
T |
|
| Q |
305 |
accttagtagtaatttaactaaaattacaatcataaatgaaacactaatatttcaaaattttctcttataacatcacaatgacacgttcatc |
396 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23924759 |
accttagtagtaatttaacttaaattacaatcataaatgaaacactaatatttcacaattttctcttataacatcacaatgacacgttcatc |
23924850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 181 - 396
Target Start/End: Original strand, 11845592 - 11845822
Alignment:
| Q |
181 |
cttggctgccaaagtagctactcatagagtacaaataaatcaaaatcattcttctcaaatagtaaaagc---------------ctccaagcaacaacca |
265 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11845592 |
cttggctgccaaagtagctactcacagagtacaaataaatcaaaatcattcttctcaaatagtaaaagcaaaactagataactcctccaagcaacaacca |
11845691 |
T |
|
| Q |
266 |
acatggaacaaactaagatatacccttctttaatattgtaccttagtagtaatttaactaaaattacaatcataaatgaaacactaatatttcaaaattt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11845692 |
acatggaacaaactaagatatacccttctttaatattgtaccttagtagtaatttaactaaaattacaatcataaatgaaacactaatatttcaaaattt |
11845791 |
T |
|
| Q |
366 |
tctcttataacatcacaatgacacgttcatc |
396 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
11845792 |
tctcttataacatcacaatgacacgttcatc |
11845822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 11845462 - 11845593
Alignment:
| Q |
20 |
aattagtcatacgtataagtctacaattctggccttttagtagcattttattttgactcaatagcaatgaatatcttagaattctagaactcaagaaagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11845462 |
aattagtcatacgtataagtctacaattctggccttttagtagcattttattttgactcaatagcaatgaatatcttagaattctagaactcaagaaagg |
11845561 |
T |
|
| Q |
120 |
agtaaaaagcatgaaatagctagaatagtact |
151 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
11845562 |
agtaaaaagcatgaaatagctagaatagtact |
11845593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 38325145 - 38325031
Alignment:
| Q |
79 |
aatagcaatgaatatcttagaattctagaactcaagaaaggagtaaaaagcatgaaatagctagaatagtactaggacatacatgttgatgtccatgaa- |
177 |
Q |
| |
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||||| ||||| ||||||| ||||||| ||||| |||||||| ||||||| ||||| |||||||| ||| || || |||| |||||||||||| || |
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| T |
38325145 |
aatagtaatgattatcttaaaattctaaaactcgagaaaggaataaaaaggatgaagtagctagataggtaataatacttacaggttgatgtccataaaa |
38325046 |
T |
|
| Q |
178 |
gtgcttggctgccaa |
192 |
Q |
| |
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||||||||||||||| |
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| T |
38325045 |
gtgcttggctgccaa |
38325031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 6100759 - 6100710
Alignment:
| Q |
198 |
ctactcatagagtacaaataaatcaaaatcattcttctcaaatagtaaaag |
248 |
Q |
| |
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||||||||||| |||||| ||||||||| ||||||||||||||| |||||| |
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| T |
6100759 |
ctactcatagaatacaaa-aaatcaaaaacattcttctcaaatattaaaag |
6100710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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